Protein Detail

Protein Information

PDBId & Chain	5I8J : B
Molecule	Dmd discriminator of mRNA degradation
Residues	62
Sequence
SSE Sequence^*(5)	`EEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Ca.Ea-Cp.Ep.Cp-Ea.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5I8J_B

Protein Id: 5I8J_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5I8J_B

Protein Id: 5I8J_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
4	EEHE	Ea.Ca.Ca-Cp.Ep-Ea	True	3ZOQ:B, 3ZOQ:C, 4L5N:D, 4L5N:E, 4L5N:F,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
5I8J	A	64	Dmd discriminator of mRNA degradation	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3CJS	B	72	50S ribosomal protein L11	View
3CJS	C	68	50S ribosomal protein L11	View
4OYC	A	83	Lipoprotein PrgK	View
4OYC	B	89	Lipoprotein PrgK	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Y1B	A	86	Outer membrane lipoprotein RcsF	View
2ZW1	A	57	Protein LG	View
3FIL	A	55	Immunoglobulin G-binding protein G	View
3FIL	B	56	Immunoglobulin G-binding protein G	View
3FJU	B	65	Carboxypeptidase A inhibitor	View
3MP9	A	61	Immunoglobulin G-binding protein G	View
3MP9	B	61	Immunoglobulin G-binding protein G	View
3O27	A	60	Putative uncharacterized protein	View
3O65	H	75	Polyubiquitin-C	View
3QX1	A	81	FAS-associated factor 1	View
3S2K	C	76	Dickkopf-related protein 1	View
4BWS	C	66	CD2 antigen cytoplasmic tail-binding protein 2	View
4BWS	F	67	CD2 antigen cytoplasmic tail-binding protein 2	View
4HKZ	E	63	Protein L	View
4HRS	A	66	Small archaeal modifier protein 2	View
4I6P	B	82	Partitioning defective 3 homolog	View
4JE3	B	77	Central kinetochore subunit CHL4	View
4KV2	A	90	Peptidase M23	View
4KV2	B	90	Peptidase M23	View
4RV0	H	49	Nuclear protein localization protein 4 homolog	View
4WH4	A	56	Immunoglobulin G-binding protein G	View
4WH4	B	56	Immunoglobulin G-binding protein G	View
4XKL	C	78	Ubiquitin-60S ribosomal protein L40	View
4ZDT	A	69	Structure-specific endonuclease subunit slx1	View
4ZDT	C	70	Structure-specific endonuclease subunit slx1	View
5BY8	B	85	Uncharacterized protein	View
5IP4	E	84	Neuronal migration protein doublecortin	View
5JW7	B	61	E3 ubiquitin-protein ligase TRIM56	View
1EM7	A	56	Immunoglobulin G-binding protein G	View
1KH0	A	65	Putative uncharacterized protein	View
1MG4	A	101	Serine/threonine-protein kinase DCLK1	View
1MHX	A	65	Protein LG	View
1MI0	A	61	Protein LG	View
1MVF	D	44	Antitoxin MazE	View
1SYX	B	62	CD2 antigen cytoplasmic tail-binding protein 2	View
2ASK	A	101	Artemin	View
2B97	A	70	Hydrophobin-2	View
2FCW	B	78	Low-density lipoprotein receptor	View
2FQM	A	65	Phosphoprotein	View
2FZ6	A	72	Hydrophobin-1	View
2IBL	A	108	Fibritin	View
2IGD	A	61	Immunoglobulin G-binding protein G	View
2ON8	A	56	Immunoglobulin G-binding protein G	View
4GLS	C	56		View
4IOI	E	63	Protein L	View
5NVG	A	75	Polyubiquitin-B	View
2GB1	A	56	Immunoglobulin G-binding protein G	View
2PTL	A	78	Protein LG	View
1P7E	A	56	Immunoglobulin G-binding protein G	View

Topology view of query protein [ProLego results]

5I8J : B

Topology Information