Protein Detail

Protein Information

PDBId & Chain	3EJ9 : F
Molecule	Beta-subunit of trans-3-chloroacrylic acid dehalogenase
Residues	58
Sequence
SSE Sequence^*(3)	`EHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca-Ep`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3EJ9_F

Protein Id: 3EJ9_F

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3EJ9_F

Protein Id: 3EJ9_F

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X4K	B	62	Probable tautomerase SAR1376	View
3EJ9	B	59	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3EJ9	D	58	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3MB2	B	59	Uncharacterized protein	View
3MB2	D	58	Uncharacterized protein	View
3MB2	F	54	Uncharacterized protein	View
3MB2	H	58	Uncharacterized protein	View
3MB2	J	59	Uncharacterized protein	View
3MB2	L	54	Uncharacterized protein	View
4X1C	B	55	2-hydroxymuconate tautomerase	View
2PJR	B	95	ATP-dependent DNA helicase PcrA	View
d3ej9b_	--	59	u'Beta-subunit of trans-3-chloroacrylic acid dehalogenase'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZVX	A	58	Pancreatic trypsin inhibitor	View
2ZVX	B	57	Pancreatic trypsin inhibitor	View
3BYB	A	58	Kunitz-type serine protease inhibitor textilinin-1	View
3BYB	B	58	Kunitz-type serine protease inhibitor textilinin-1	View
3BYB	C	58	Kunitz-type serine protease inhibitor textilinin-1	View
3E7R	L	40	Plectasin	View
3FP7	J	43	Pancreatic trypsin inhibitor	View
3IUF	A	32	Zinc finger protein ubi-d4	View
3M7Q	B	61	PI-stichotoxin-She2a	View
3MJH	B	34	Early endosome antigen 1	View
3MJH	D	33	Early endosome antigen 1	View
3PIS	A	39	Kazal-type serine protease inhibitor SPI-1	View
3PIS	D	39	Kazal-type serine protease inhibitor SPI-1	View
3RDY	A	67	Proteinase inhibitor	View
3U1J	E	56	Pancreatic trypsin inhibitor	View
3WUP	A	31	DNA polymerase eta	View
4BQD	B	65	Tissue factor pathway inhibitor	View
4DTG	K	60	Tissue factor pathway inhibitor	View
4E1P	A	55	Nucleoid-associated protein Lsr2	View
4E1P	B	56	Nucleoid-associated protein Lsr2	View
4GV5	A	42	Crotamine	View
4GV5	B	42	Crotamine	View
4GV5	C	42	Crotamine	View
4HR6	A	41	rRNA N-glycosidase	View
4MIT	E	40	Serine/threonine protein kinase PAK, putative	View
4MIT	F	35	Serine/threonine protein kinase PAK, putative	View
4MIT	G	43	Serine/threonine protein kinase PAK, putative	View
4MIT	H	42	Serine/threonine protein kinase PAK, putative	View
4MPI	A	44	Class I chitinase	View
4MPI	B	45	Class I chitinase	View
4NTW	B	59	Kunitz-type neurotoxin MitTx-alpha	View
4OWT	C	39	SOSS complex subunit C	View
4R2Y	A	64	Anaphase-promoting complex subunit 11	View
4R2Y	B	59	Anaphase-promoting complex subunit 11	View
4R2Y	C	65	Anaphase-promoting complex subunit 11	View
4R2Y	D	62	Anaphase-promoting complex subunit 11	View
4U30	W	53	Protein AMBP	View
4U30	X	53	Protein AMBP	View
4U30	Y	53	Protein AMBP	View
4U30	Z	53	Protein AMBP	View
4U32	X	54	Kunitz-type protease inhibitor 2	View
4UR6	A	64	Ice-structuring protein	View
4UR6	B	62	Ice-structuring protein	View
4WP4	A	43	Pro-hevein	View
4WXA	F	49	EKC/KEOPS complex subunit GON7	View
4X8W	G	42	RE14437p	View
4XKL	D	31	Calcium-binding and coiled-coil domain-containing protein 2	View
4Z0O	A	55	Zinc finger CW-type PWWP domain protein 2	View
5D0I	B	51	RING finger protein 165	View
5I72	A	51	RING finger protein Z	View
5I72	B	53	RING finger protein Z	View
5JB5	A	57	Pancreatic trypsin inhibitor	View
5JB5	B	58	Pancreatic trypsin inhibitor	View
5JB5	C	58	Pancreatic trypsin inhibitor	View
5JBT	Y	38	Amyloid-like protein 2	View
5JG6	A	61	Anaphase-promoting complex subunit 11	View
5JG6	D	66	Anaphase-promoting complex subunit 11	View
5TVO	B	59	S-adenosylmethionine decarboxylase proenzyme	View
1AAP	A	56	Amyloid beta A4 protein	View
1BRB	I	51	Pancreatic trypsin inhibitor	View
1BUN	B	61	Kunitz-type serine protease inhibitor homolog beta-bungarotoxin B2 chain	View
1D0D	A	60	Tick anticoagulant peptide	View
1DTX	A	58	Kunitz-type serine protease inhibitor homolog alpha-dendrotoxin	View
1FAK	I	55	Pancreatic trypsin inhibitor	View
1G6X	A	58	Pancreatic trypsin inhibitor	View
1HG7	A	66	Type-3 ice-structuring protein HPLC 12	View
1KTH	A	58	Collagen alpha-3(VI) chain	View
1MHM	B	54	S-adenosylmethionine decarboxylase proenzyme	View
1UCS	A	64	Ice-structuring protein RD1	View
1Y62	A	56	Kunitz-type conkunitzin-S1	View
2B9D	A	52	Protein E7	View
2I61	A	62	Beta-insect depressant toxin LqhIT2	View
2UUY	B	52	Tryptase inhibitor	View
2VUT	I	42	Nitrogen regulatory protein areA	View
3AUB	A	58		View
5M4V	A	57		View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3S2R	A	64	CDGSH iron-sulfur domain-containing protein NEET	View
3S2R	B	78	CDGSH iron-sulfur domain-containing protein NEET	View
4EZF	A	75	CDGSH iron-sulfur domain-containing protein 1	View
4EZF	B	65	CDGSH iron-sulfur domain-containing protein 1	View
4OOA	A	66	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	B	66	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	C	64	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	D	64	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	E	65	CDGSH iron-sulfur domain-containing protein 2	View
4OOA	F	67	CDGSH iron-sulfur domain-containing protein 2	View
4R10	B	41	Cadherin-related hmr-1	View
5TDC	C	71	E3 ubiquitin-protein ligase UBR1	View

Topology view of query protein [ProLego results]

3EJ9 : F

Topology Information