Protein Detail

Protein Information

Domain Id	1shyB02
DB_Source-Class	CATH 3.5, 3.30.1680.10
Molecule	Hepatocyte growth factor receptor
Residues	49
Sequence
SSE Sequence^*(3)	`HEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ea-Cp`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1shyB02

Protein Id: 1shyB02

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1shyB02

Protein Id: 1shyB02

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3E7R	L	40	Plectasin	View
4GV5	A	42	Crotamine	View
4GV5	B	42	Crotamine	View
4GV5	C	42	Crotamine	View
4OWT	C	39	SOSS complex subunit C	View
4X8W	G	42	RE14437p	View
5TVO	B	59	S-adenosylmethionine decarboxylase proenzyme	View
1MHM	B	54	S-adenosylmethionine decarboxylase proenzyme	View
2I61	A	62	Beta-insect depressant toxin LqhIT2	View
d1ev0a_	--	58	u'Cell division topological specificity factor'	View
d1fjna_	--	39	u'Defensin MGD-1'	View
d1icaa_	--	40	u'Phormicin'	View
d1jxca_	--	68	u'Defensin-like protein 195'	View
d1lira_	--	36	u'Potassium channel toxin alpha-KTx 1.2'	View
d1mm0a_	--	36	u'Termicin'	View
d1n8ma_	--	38	u'Potassium channel toxin alpha-KTx 6.4'	View
d1olza3	--	56	u'Semaphorin-4D'	View
d1pnha_	--	31	u'Potassium channel toxin alpha-KTx 5.2'	View
d1shyb2	--	49	u'Hepatocyte growth factor receptor'	View
d2i61a_	--	62	u'Beta-insect depressant toxin LqhIT2'	View
d2pspa2	--	53	u'Trefoil factor 2'	View
1ev0A00	--	58	Cell division topological specificity factor	View
1jxcA00	--	68	Defensin-like protein 195	View
1wmtA00	--	41	Potassium channel toxin alpha-KTx 6.11	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X4K	B	62	Probable tautomerase SAR1376	View
2ZVX	A	58	Pancreatic trypsin inhibitor	View
2ZVX	B	57	Pancreatic trypsin inhibitor	View
3BYB	A	58	Kunitz-type serine protease inhibitor textilinin-1	View
3BYB	B	58	Kunitz-type serine protease inhibitor textilinin-1	View
3BYB	C	58	Kunitz-type serine protease inhibitor textilinin-1	View
3EJ9	B	59	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3EJ9	D	58	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3EJ9	F	58	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3FP7	J	43	Pancreatic trypsin inhibitor	View
3IUF	A	32	Zinc finger protein ubi-d4	View
3M7Q	B	61	PI-stichotoxin-She2a	View
3MB2	B	59	Uncharacterized protein	View
3MB2	D	58	Uncharacterized protein	View
3MB2	F	54	Uncharacterized protein	View
3MB2	H	58	Uncharacterized protein	View
3MB2	J	59	Uncharacterized protein	View
3MB2	L	54	Uncharacterized protein	View
3MJH	B	34	Early endosome antigen 1	View
3MJH	D	33	Early endosome antigen 1	View
3PIS	A	39	Kazal-type serine protease inhibitor SPI-1	View
3PIS	D	39	Kazal-type serine protease inhibitor SPI-1	View
3RDY	A	67	Proteinase inhibitor	View
3U1J	E	56	Pancreatic trypsin inhibitor	View
3WUP	A	31	DNA polymerase eta	View
4BQD	B	65	Tissue factor pathway inhibitor	View
4DTG	K	60	Tissue factor pathway inhibitor	View
4E1P	A	55	Nucleoid-associated protein Lsr2	View
4E1P	B	56	Nucleoid-associated protein Lsr2	View
4HR6	A	41	rRNA N-glycosidase	View
4MIT	E	40	Serine/threonine protein kinase PAK, putative	View
4MIT	F	35	Serine/threonine protein kinase PAK, putative	View
4MIT	G	43	Serine/threonine protein kinase PAK, putative	View
4MIT	H	42	Serine/threonine protein kinase PAK, putative	View
4MPI	A	44	Class I chitinase	View
4MPI	B	45	Class I chitinase	View
4NTW	B	59	Kunitz-type neurotoxin MitTx-alpha	View
4R2Y	A	64	Anaphase-promoting complex subunit 11	View
4R2Y	B	59	Anaphase-promoting complex subunit 11	View
4R2Y	C	65	Anaphase-promoting complex subunit 11	View
4R2Y	D	62	Anaphase-promoting complex subunit 11	View
4U30	W	53	Protein AMBP	View
4U30	X	53	Protein AMBP	View
4U30	Y	53	Protein AMBP	View
4U30	Z	53	Protein AMBP	View
4U32	X	54	Kunitz-type protease inhibitor 2	View
4UR6	A	64	Ice-structuring protein	View
4UR6	B	62	Ice-structuring protein	View
4WP4	A	43	Pro-hevein	View
4WXA	F	49	EKC/KEOPS complex subunit GON7	View
4X1C	B	55	2-hydroxymuconate tautomerase	View
4XKL	D	31	Calcium-binding and coiled-coil domain-containing protein 2	View
4Z0O	A	55	Zinc finger CW-type PWWP domain protein 2	View
5D0I	B	51	RING finger protein 165	View
5I72	A	51	RING finger protein Z	View
5I72	B	53	RING finger protein Z	View
5JB5	A	57	Pancreatic trypsin inhibitor	View
5JB5	B	58	Pancreatic trypsin inhibitor	View
5JB5	C	58	Pancreatic trypsin inhibitor	View
5JBT	Y	38	Amyloid-like protein 2	View
5JG6	A	61	Anaphase-promoting complex subunit 11	View
5JG6	D	66	Anaphase-promoting complex subunit 11	View
1AAP	A	56	Amyloid beta A4 protein	View
1BRB	I	51	Pancreatic trypsin inhibitor	View
1BUN	B	61	Kunitz-type serine protease inhibitor homolog beta-bungarotoxin B2 chain	View
1D0D	A	60	Tick anticoagulant peptide	View
1DTX	A	58	Kunitz-type serine protease inhibitor homolog alpha-dendrotoxin	View
1FAK	I	55	Pancreatic trypsin inhibitor	View
1G6X	A	58	Pancreatic trypsin inhibitor	View
1HG7	A	66	Type-3 ice-structuring protein HPLC 12	View
1KTH	A	58	Collagen alpha-3(VI) chain	View
1UCS	A	64	Ice-structuring protein RD1	View
1Y62	A	56	Kunitz-type conkunitzin-S1	View
2B9D	A	52	Protein E7	View
2PJR	B	95	ATP-dependent DNA helicase PcrA	View
2UUY	B	52	Tryptase inhibitor	View
2VUT	I	42	Nitrogen regulatory protein areA	View
3AUB	A	58		View
5M4V	A	57		View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Y8T	B	36	Rhoptry neck protein 2	View
2Y8T	E	36	Rhoptry neck protein 2	View
2ZJR	Z	58	50S ribosomal protein L32	View
3H31	A	74	High potential iron-sulfur protein	View
3K65	A	80	Prothrombin	View
3O27	B	57	Putative uncharacterized protein	View
3SF4	D	45	Protein inscuteable homolog	View
3SF4	E	41	Protein inscuteable homolog	View
3SF4	F	46	Protein inscuteable homolog	View
4I6M	D	53	Regulator of Ty1 transposition protein 102	View
4XO1	A	55	Protein GnsA	View
4YIZ	B	39	Rhoptry neck protein 2, putative	View
4YIZ	D	39	Rhoptry neck protein 2, putative	View
4YIZ	F	39	Rhoptry neck protein 2, putative	View
5DM6	Z	57	50S ribosomal protein L32	View
5ITM	A	47	AbrB family transcriptional regulator	View
5ITM	B	47	AbrB family transcriptional regulator	View
5ITM	C	47	AbrB family transcriptional regulator	View
5ITM	D	47	AbrB family transcriptional regulator	View
5ITM	E	46	AbrB family transcriptional regulator	View
5ITM	F	46	AbrB family transcriptional regulator	View
1AVY	A	68	Fibritin	View
1HLQ	A	75	High-potential iron-sulfur protein	View
1ICF	I	65	HLA class II histocompatibility antigen gamma chain	View
1ISU	A	62	High-potential iron-sulfur protein	View
1PML	A	81	Tissue-type plasminogen activator	View
2ATC	B	152	Aspartate carbamoyltransferase regulatory chain	View
2DLB	A	69	SPBc2 prophage-derived uncharacterized protein YopT	View
2GGV	A	44	Genome polyprotein	View

Topology view of query protein [ProLego results]

1shyB02

Topology Information