Protein Detail

Protein Information

PDBId & Chain	4L5N : D
Molecule	Early protein GP1B
Residues	49
Sequence
SSE Sequence^*(4)	`EEHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Ca-Cp.Ep-Ea`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4L5N_D

Protein Id: 4L5N_D

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4L5N_D

Protein Id: 4L5N_D

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3ZOQ	B	48	Putative uncharacterized protein 0.8	View
3ZOQ	C	53	Putative uncharacterized protein 0.8	View
4L5N	E	47	Early protein GP1B	View
4L5N	F	48	Early protein GP1B	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YIZ	A	68	Uncharacterized protein	View
2YIZ	B	68	Uncharacterized protein	View
2YIZ	C	68	Uncharacterized protein	View
2YIZ	D	68	Uncharacterized protein	View
3I8Z	A	50	E3 SUMO-protein ligase CBX4	View
3KA5	B	57	Ribosome-associated protein Y (PSrp-1)	View
3QKB	A	91	Uncharacterized protein	View
3QKB	B	90	Uncharacterized protein	View
3QKB	C	89	Uncharacterized protein	View
3QKB	D	90	Uncharacterized protein	View
3QKB	E	89	Uncharacterized protein	View
3VDJ	A	71	Circumsporozoite (CS) protein	View
4FAS	E	49	Uncharacterized protein	View
4FAS	F	49	Uncharacterized protein	View
4XDX	A	70	Interleukin-8	View
4ZLT	L	62	C-C motif chemokine 3	View
1J8B	A	85	Nucleoid-associated protein HI_0442	View
1PZW	A	80	Transcription factor grauzone	View
1ZXT	A	69	VMIP-1A	View
2CC6	A	64	Uncharacterized protein	View
2FMA	A	59	Amyloid beta A4 protein	View
2HJ1	A	77	Protein RnfH	View
2UX9	A	66	Dodecin	View
2VXA	A	67	Dodecin	View
5JG9	A	46		View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XGF	C	216	Long-tail fiber protein p37	View
2YVR	A	45	Transcription intermediary factor 1-beta	View
2YVR	B	45	Transcription intermediary factor 1-beta	View
3DDT	A	48	E3 ubiquitin-protein ligase TRIM63	View
3DDT	B	47	E3 ubiquitin-protein ligase TRIM63	View
3DDT	C	44	E3 ubiquitin-protein ligase TRIM63	View
3EGR	A	62	Phenylacetic acid degradation B	View
3OVO	A	56	Ovomucoid	View
3Q1D	A	47	Tripartite motif-containing protein 54	View
4GI3	C	57	Greglin	View
4HGU	A	40	Silk protease inhibitor 2	View
4L5N	C	50	Early protein GP1B	View
5K3Q	A	43	Tripartite motif-containing protein 5	View
5K3Q	B	43	Tripartite motif-containing protein 5	View
5K3Q	C	42	Tripartite motif-containing protein 5	View
5K3Q	D	41	Tripartite motif-containing protein 5	View
5TDA	A	71	E3 ubiquitin-protein ligase UBR2	View
5TDC	A	70	E3 ubiquitin-protein ligase UBR1	View
1DGW	X	76	Canavalin	View
1H59	B	45	Insulin-like growth factor-binding protein 5	View
1HPT	A	56	Serine protease inhibitor Kazal-type 1	View
1LDT	L	46	Leech-derived tryptase inhibitor C	View
1P9G	A	40	Antifungal peptide 2	View
1R0R	I	51	Ovomucoid	View
1TGS	I	55	Serine protease inhibitor Kazal-type 1	View
2BAY	A	56	Pre-mRNA-processing factor 19	View
2ERW	A	53	Thrombin inhibitor infestin	View
2F3C	I	46	Thrombin inhibitor infestin	View
4NJC	A	58		View
5MNJ	D	63	Protein Mdm4	View

Topology view of query protein [ProLego results]

4L5N : D

Topology Information