Protein Detail

Protein Information

PDBId & Chain	5D0I : B
Molecule	RING finger protein 165
Residues	51
Sequence
SSE Sequence^*(3)	`EEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca-Cp`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5D0I_B

Protein Id: 5D0I_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5D0I_B

Protein Id: 5D0I_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZVX	A	58	Pancreatic trypsin inhibitor	View
2ZVX	B	57	Pancreatic trypsin inhibitor	View
3BYB	A	58	Kunitz-type serine protease inhibitor textilinin-1	View
3BYB	B	58	Kunitz-type serine protease inhibitor textilinin-1	View
3BYB	C	58	Kunitz-type serine protease inhibitor textilinin-1	View
3FP7	J	43	Pancreatic trypsin inhibitor	View
3IUF	A	32	Zinc finger protein ubi-d4	View
3M7Q	B	61	PI-stichotoxin-She2a	View
3MJH	B	34	Early endosome antigen 1	View
3MJH	D	33	Early endosome antigen 1	View
3U1J	E	56	Pancreatic trypsin inhibitor	View
3WUP	A	31	DNA polymerase eta	View
4BQD	B	65	Tissue factor pathway inhibitor	View
4DTG	K	60	Tissue factor pathway inhibitor	View
4E1P	A	55	Nucleoid-associated protein Lsr2	View
4E1P	B	56	Nucleoid-associated protein Lsr2	View
4MPI	A	44	Class I chitinase	View
4MPI	B	45	Class I chitinase	View
4NTW	B	59	Kunitz-type neurotoxin MitTx-alpha	View
4R2Y	A	64	Anaphase-promoting complex subunit 11	View
4R2Y	B	59	Anaphase-promoting complex subunit 11	View
4R2Y	C	65	Anaphase-promoting complex subunit 11	View
4R2Y	D	62	Anaphase-promoting complex subunit 11	View
4U30	W	53	Protein AMBP	View
4U30	X	53	Protein AMBP	View
4U30	Y	53	Protein AMBP	View
4U30	Z	53	Protein AMBP	View
4U32	X	54	Kunitz-type protease inhibitor 2	View
4UR6	A	64	Ice-structuring protein	View
4UR6	B	62	Ice-structuring protein	View
4WP4	A	43	Pro-hevein	View
4WXA	F	49	EKC/KEOPS complex subunit GON7	View
4XKL	D	31	Calcium-binding and coiled-coil domain-containing protein 2	View
4Z0O	A	55	Zinc finger CW-type PWWP domain protein 2	View
5I72	A	51	RING finger protein Z	View
5I72	B	53	RING finger protein Z	View
5JB5	A	57	Pancreatic trypsin inhibitor	View
5JB5	B	58	Pancreatic trypsin inhibitor	View
5JB5	C	58	Pancreatic trypsin inhibitor	View
5JG6	A	61	Anaphase-promoting complex subunit 11	View
5JG6	D	66	Anaphase-promoting complex subunit 11	View
1AAP	A	56	Amyloid beta A4 protein	View
1BUN	B	61	Kunitz-type serine protease inhibitor homolog beta-bungarotoxin B2 chain	View
1D0D	A	60	Tick anticoagulant peptide	View
1DTX	A	58	Kunitz-type serine protease inhibitor homolog alpha-dendrotoxin	View
1FAK	I	55	Pancreatic trypsin inhibitor	View
1G6X	A	58	Pancreatic trypsin inhibitor	View
1HG7	A	66	Type-3 ice-structuring protein HPLC 12	View
1KTH	A	58	Collagen alpha-3(VI) chain	View
1UCS	A	64	Ice-structuring protein RD1	View
1Y62	A	56	Kunitz-type conkunitzin-S1	View
2B9D	A	52	Protein E7	View
2UUY	B	52	Tryptase inhibitor	View
2VUT	I	42	Nitrogen regulatory protein areA	View
3AUB	A	58		View
5M4V	A	57		View
d1b8ta2	--	65	u'Cysteine and glycine-rich protein 1'	View
d1bhia_	--	38	u'Cyclic AMP-dependent transcription factor ATF-2'	View
d1bika1	--	54	u'Protein AMBP'	View
d1bunb_	--	61	u'Kunitz-type serine protease inhibitor homolog beta-bungarotoxin B2 chain'	View
d1d0da_	--	60	u'Tick anticoagulant peptide'	View
d1dtxa_	--	58	u'Kunitz-type serine protease inhibitor homolog alpha-dendrotoxin'	View
d1fu9a_	--	36	u'Zinc finger protein ush'	View
d1g6xa_	--	58	u'Pancreatic trypsin inhibitor'	View
d1jjda_	--	52	u'Metallothionein'	View
d1ktha_	--	58	u'Collagen alpha-3(VI) chain'	View
d1m36a_	--	33	u'Histone acetyltransferase KAT6A'	View
d1neia_	--	60	u'Protein YoaG'	View
d1njqa_	--	37	u'Transcriptional regulator SUPERMAN'	View
d1q9ba_	--	43	u'Pro-hevein'	View
d1srka_	--	35	u'Zinc finger protein ZFPM1'	View
d1tf3a1	--	31	u'Transcription factor IIIA'	View
d1tf3a3	--	31	u'Transcription factor IIIA'	View
d1tocr1	--	56	u'Ornithodorin'	View
d1tocr2	--	63	u'Ornithodorin'	View
d1u5sb2	--	35	u'LIM and senescent cell antigen-like-containing domain protein 1'	View
d1u85a1	--	31	u'Krueppel-like factor 3'	View
d1ucsa_	--	64	u'Ice-structuring protein RD1'	View
d1v6ga2	--	40	u'Actin-binding LIM protein 2'	View
d1wjpa3	--	41	u'Zinc finger and BTB domain-containing protein 21'	View
d1x4ka1	--	32	u'Four and a half LIM domains protein 2'	View
d1x61a2	--	32	u'Thyroid receptor-interacting protein 6'	View
d1x6aa2	--	34	u'LIM domain kinase 2'	View
d1x6fa1	--	75	u'Zinc finger protein 462'	View
d1x6ha1	--	37	u'Transcriptional repressor CTCF'	View
d1x6ha2	--	36	u'Transcriptional repressor CTCF'	View
d1xbta2	--	41	u'Thymidine kinase, cytosolic'	View
d1yuja_	--	54	u'Transcription factor GAGA'	View
d2b9da1	--	52	u'Protein E7'	View
d2csha2	--	44	u'Zinc finger and BTB domain-containing protein 43'	View
d2cu8a2	--	33	u'Cysteine-rich protein 2'	View
d2cupa2	--	31	u'Four and a half LIM domains protein 1'	View
d2cuqa1	--	32	u'Four and a half LIM domains protein 3'	View
d2d8xa1	--	32	u'LIM and senescent cell antigen-like-containing domain protein 1'	View
d2dasa1	--	49	u'Zinc finger MYM-type protein 5'	View
d2dj7a1	--	31	u'Actin-binding LIM protein 3'	View
d2djaa1	--	71	u'Probable E3 ubiquitin-protein ligase MID2'	View
d2dlka2	--	36	u'Zinc finger protein 692'	View
d2dloa2	--	33	u'Thyroid receptor-interacting protein 6'	View
d2dsma1	--	64	u'Uncharacterized protein YqaI'	View
d2epra1	--	35	u'POZ-, AT hook-, and zinc finger-containing protein 1'	View
d2epsa1	--	39	u'POZ-, AT hook-, and zinc finger-containing protein 1'	View
d2jz6a1	--	70	u'50S ribosomal protein L28'	View
d2uuyb1	--	51	u'Tryptase inhibitor'	View
d2vuti1	--	42	u'Nitrogen regulatory protein areA'	View
d2vy4a1	--	35	u'U11/U12 small nuclear ribonucleoprotein 48 kDa protein'	View
d3m7qb_	--	61	u'PI-stichotoxin-She2a'	View
1aapA00	--	56	Amyloid beta A4 protein	View
1bunB00	--	61	Kunitz-type serine protease inhibitor homolog beta-bungarotoxin B2 chain	View
1d0dA00	--	60	Tick anticoagulant peptide	View
1aapA00	--	56	Amyloid beta A4 protein	View
1bunB00	--	61	Kunitz-type serine protease inhibitor homolog beta-bungarotoxin B2 chain	View
1d0dA00	--	60	Tick anticoagulant peptide	View
1dtxA00	--	58	Kunitz-type serine protease inhibitor homolog alpha-dendrotoxin	View
1g6xA00	--	58	Pancreatic trypsin inhibitor	View
1gjzA00	--	53	Polyubiquitin-C	View
1jjdA00	--	52	Metallothionein	View
1kthA00	--	58	Collagen alpha-3(VI) chain	View
1neiA00	--	60	Protein YoaG	View
1ucsA00	--	64	Ice-structuring protein RD1	View
2vutI00	--	42	Nitrogen regulatory protein areA	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X4K	B	62	Probable tautomerase SAR1376	View
3E7R	L	40	Plectasin	View
3EJ9	B	59	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3EJ9	D	58	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3EJ9	F	58	Beta-subunit of trans-3-chloroacrylic acid dehalogenase	View
3MB2	B	59	Uncharacterized protein	View
3MB2	D	58	Uncharacterized protein	View
3MB2	F	54	Uncharacterized protein	View
3MB2	H	58	Uncharacterized protein	View
3MB2	J	59	Uncharacterized protein	View
3MB2	L	54	Uncharacterized protein	View
3PIS	A	39	Kazal-type serine protease inhibitor SPI-1	View
3PIS	D	39	Kazal-type serine protease inhibitor SPI-1	View
3RDY	A	67	Proteinase inhibitor	View
4GV5	A	42	Crotamine	View
4GV5	B	42	Crotamine	View
4GV5	C	42	Crotamine	View
4HR6	A	41	rRNA N-glycosidase	View
4MIT	E	40	Serine/threonine protein kinase PAK, putative	View
4MIT	F	35	Serine/threonine protein kinase PAK, putative	View
4MIT	G	43	Serine/threonine protein kinase PAK, putative	View
4MIT	H	42	Serine/threonine protein kinase PAK, putative	View
4OWT	C	39	SOSS complex subunit C	View
4X1C	B	55	2-hydroxymuconate tautomerase	View
4X8W	G	42	RE14437p	View
5JBT	Y	38	Amyloid-like protein 2	View
5TVO	B	59	S-adenosylmethionine decarboxylase proenzyme	View
1BRB	I	51	Pancreatic trypsin inhibitor	View
1MHM	B	54	S-adenosylmethionine decarboxylase proenzyme	View
2I61	A	62	Beta-insect depressant toxin LqhIT2	View
2PJR	B	95	ATP-dependent DNA helicase PcrA	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YFV	C	60	KLLA0F05115p	View
2ZJR	U	72	50S ribosomal protein L28	View
3B08	B	58	RanBP-type and C3HC4-type zinc finger-containing protein 1	View
3B08	E	59	RanBP-type and C3HC4-type zinc finger-containing protein 1	View
3B08	H	59	RanBP-type and C3HC4-type zinc finger-containing protein 1	View
3B08	K	59	RanBP-type and C3HC4-type zinc finger-containing protein 1	View
3D2Q	D	69	Muscleblind-like protein 1	View
3EGG	D	66	Neurabin-2	View
3GL6	A	52	Lysine-specific demethylase 5A	View
3HVQ	D	65	Neurabin-1	View
3KXY	Y	43	ExsE	View
3MMY	B	51	Nuclear pore complex protein Nup98-Nup96	View
3MMY	D	51	Nuclear pore complex protein Nup98-Nup96	View
3MMY	F	51	Nuclear pore complex protein Nup98-Nup96	View
3MMY	H	50	Nuclear pore complex protein Nup98-Nup96	View
3O7A	A	52	PHD finger protein 13	View
3OW2	T	53	50S ribosomal protein L24e	View
3TND	D	68	Antitoxin VapB	View
3TND	F	66	Antitoxin VapB	View
3ZG9	A	41	Lmo2229 protein	View
4EAZ	C	32	Transcription cofactor vestigial-like protein 1	View
4EAZ	D	31	Transcription cofactor vestigial-like protein 1	View
4LM6	A	62	Cryptophyte phycocyanin alpha chain	View
4LM6	C	62	Cryptophyte phycocyanin alpha chain	View
4LMS	A	80	Phycocyanin645 alpha subunit	View
4LMX	A	61	Phycoerythrin550 alpha subunit	View
4LMX	C	65	Phycoerythrin550 alpha subunit	View
4LMX	E	65	Phycoerythrin550 alpha subunit	View
4LMX	G	64	Phycoerythrin550 alpha subunit	View
4LMX	I	65	Phycoerythrin550 alpha subunit	View
4LMX	K	65	Phycoerythrin550 alpha subunit	View
4MMS	A	81	Fusion glycoprotein F0	View
4MMS	C	77	Fusion glycoprotein F0	View
4MMS	E	81	Fusion glycoprotein F0	View
4Q4W	4	57	Genome polyprotein	View
4QF2	A	53	Bromodomain adjacent to zinc finger domain protein 2A	View
4QF2	B	51	Bromodomain adjacent to zinc finger domain protein 2A	View
4QF2	C	52	Bromodomain adjacent to zinc finger domain protein 2A	View
4QF2	D	53	Bromodomain adjacent to zinc finger domain protein 2A	View
4QF3	A	57	Bromodomain adjacent to zinc finger domain protein 2B	View
4QF3	B	57	Bromodomain adjacent to zinc finger domain protein 2B	View
4WJW	A	68	Chitin biosynthesis protein CHS5	View
5E4X	A	50	Signal recognition particle 43 kDa protein, chloroplastic	View
5IYZ	E	123	Stathmin-4	View
5KX5	E	121	Stathmin-4	View
5T59	C	32	KLLA0B13629p	View
5T59	F	35	KLLA0B13629p	View
5TDR	A	70	SET domain-containing protein 3	View
1D4M	4	61	Genome polyprotein	View
1G3J	B	41	Transcription factor 7-like 1-A	View
1HXS	4	68	Genome polyprotein	View
1J8E	A	44	Prolow-density lipoprotein receptor-related protein 1	View
1JY2	O	51	Fibrinogen beta chain	View
1VPZ	A	55	Carbon storage regulator homolog	View
1VQO	U	53	50S ribosomal protein L24e	View
1XG0	A	75	Phycoerythrin alpha-3 chain, chloroplastic	View
1XG0	B	67	Phycoerythrin alpha-2 chain, chloroplastic	View
1XU1	R	38	Tumor necrosis factor receptor superfamily member 13B	View
2BTI	A	57		View
2DS5	A	43	ATP-dependent Clp protease ATP-binding subunit ClpX	View
2PUY	A	59	PHD finger protein 21A	View
2V89	A	78	V(D)J recombination-activating protein 2	View

Topology view of query protein [ProLego results]

5D0I : B

Topology Information