Protein Detail

Protein Information

Domain Id	d1shyb2
DB_Source-Class	ASTRAL-1.75B, g.16.2.1
Molecule	u'Hepatocyte growth factor receptor'
Residues	49
Sequence
SSE Sequence^*(3)	`HEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ea-Cp`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d1shyb2

Protein Id: d1shyb2

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d1shyb2

Protein Id: d1shyb2

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3E7R	L	40	Plectasin	View
4GV5	A	42	Crotamine	View
4GV5	B	42	Crotamine	View
4GV5	C	42	Crotamine	View
4OWT	C	39	SOSS complex subunit C	View
4X8W	G	42	RE14437p	View
5TVO	B	59	S-adenosylmethionine decarboxylase proenzyme	View
1MHM	B	54	S-adenosylmethionine decarboxylase proenzyme	View
2I61	A	62	Beta-insect depressant toxin LqhIT2	View
d1ev0a_	--	58	u'Cell division topological specificity factor'	View
d1fjna_	--	39	u'Defensin MGD-1'	View
d1icaa_	--	40	u'Phormicin'	View
d1jxca_	--	68	u'Defensin-like protein 195'	View
d1lira_	--	36	u'Potassium channel toxin alpha-KTx 1.2'	View
d1mm0a_	--	36	u'Termicin'	View
d1n8ma_	--	38	u'Potassium channel toxin alpha-KTx 6.4'	View
d1olza3	--	56	u'Semaphorin-4D'	View
d1pnha_	--	31	u'Potassium channel toxin alpha-KTx 5.2'	View
d2i61a_	--	62	u'Beta-insect depressant toxin LqhIT2'	View
d2pspa2	--	53	u'Trefoil factor 2'	View
1ev0A00	--	58	Cell division topological specificity factor	View
1jxcA00	--	68	Defensin-like protein 195	View
1shyB02	--	49	Hepatocyte growth factor receptor	View
1wmtA00	--	41	Potassium channel toxin alpha-KTx 6.11	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Y8T	B	36	Rhoptry neck protein 2	View
2Y8T	E	36	Rhoptry neck protein 2	View
2ZJR	Z	58	50S ribosomal protein L32	View
3E7R	L	40	Plectasin	View
3H31	A	74	High potential iron-sulfur protein	View
3K65	A	80	Prothrombin	View
3O27	B	57	Putative uncharacterized protein	View
3RDY	A	67	Proteinase inhibitor	View
3SF4	D	45	Protein inscuteable homolog	View
3SF4	E	41	Protein inscuteable homolog	View
3SF4	F	46	Protein inscuteable homolog	View
4GV5	A	42	Crotamine	View
4GV5	B	42	Crotamine	View
4GV5	C	42	Crotamine	View
4HR6	A	41	rRNA N-glycosidase	View
4I6M	D	53	Regulator of Ty1 transposition protein 102	View
4OWT	C	39	SOSS complex subunit C	View
4X8W	G	42	RE14437p	View
4XO1	A	55	Protein GnsA	View
4YIZ	B	39	Rhoptry neck protein 2, putative	View
4YIZ	D	39	Rhoptry neck protein 2, putative	View
4YIZ	F	39	Rhoptry neck protein 2, putative	View
5DM6	Z	57	50S ribosomal protein L32	View
5ITM	A	47	AbrB family transcriptional regulator	View
5ITM	B	47	AbrB family transcriptional regulator	View
5ITM	C	47	AbrB family transcriptional regulator	View
5ITM	D	47	AbrB family transcriptional regulator	View
5ITM	E	46	AbrB family transcriptional regulator	View
5ITM	F	46	AbrB family transcriptional regulator	View
5TVO	B	59	S-adenosylmethionine decarboxylase proenzyme	View
1AVY	A	68	Fibritin	View
1HLQ	A	75	High-potential iron-sulfur protein	View
1ICF	I	65	HLA class II histocompatibility antigen gamma chain	View
1ISU	A	62	High-potential iron-sulfur protein	View
1MHM	B	54	S-adenosylmethionine decarboxylase proenzyme	View
1PML	A	81	Tissue-type plasminogen activator	View
2ATC	B	152	Aspartate carbamoyltransferase regulatory chain	View
2DLB	A	69	SPBc2 prophage-derived uncharacterized protein YopT	View
2GGV	A	44	Genome polyprotein	View
2I61	A	62	Beta-insect depressant toxin LqhIT2	View

Topology view of query protein [ProLego results]

d1shyb2

Topology Information