Protein Detail

Protein Information

PDBId & Chain	5CFF : E
Molecule	Maternal effect protein staufen
Residues	69
Sequence
SSE Sequence^*(5)	`HEEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ea.Ea.Ca-Cp.0.Cp-0.Ca-Hr`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5CFF_E

Protein Id: 5CFF_E

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5CFF_E

Protein Id: 5CFF_E

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
4	HEEE	Ca.Ea.Ea-Cp.0-0	False	3LYV:E, 3LYV:F,	d1o6wa2,
4	EEEH	Ea.Ea.Ca-0.Cp-Ca	True	2YZT:A, 3BID:D, 3BID:H, 3FPU:B, 3TN2:A, 4MHE:C, 4MHE:D, 4OIJ:A, 4OIJ:B, 4WPY:A, 4XT1:B, 4ZLT:F, 5COY:A, 5COY:B, 5EKI:A, 5EKI:B, 5EKI:C, 5EKI:D, 5EKI:E, 5EKI:F, 1DOK:A, 1F2L:A, 2FGG:A, 2FHT:A, 2Q8R:E, 2RA4:A,	d1b3aa_, d1f2la_, d1g2sa_, d1j8ia_, d1o80a_, d1wiia_, d2fgga1, d2q8re_, d2ra4a_, 1b3aA00, 1b69A00, 1b3aA00, 1b69A00, 1eigA00, 1f2lA00, 1icwB00, 1j8iA00, 2fhtA00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3ADG	A	72	Double-stranded RNA-binding protein 1	View
3LLH	A	64	RISC-loading complex subunit TARBP2	View
3LLH	B	66	RISC-loading complex subunit TARBP2	View
4X8W	A	69	RE14437p	View
4X8W	B	69	RE14437p	View
4X8W	C	69	RE14437p	View
5CFF	G	69	Maternal effect protein staufen	View
5CFF	H	64	Maternal effect protein staufen	View
5D0I	A	62	RING finger protein 165	View
1DI2	A	69	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog B	View
d1di2a_	--	69	u'Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog B'	View
d1x48a1	--	76	u'Interferon-induced, double-stranded RNA-activated protein kinase'	View
d2dixa1	--	73	u'Interferon-inducible double-stranded RNA-dependent protein kinase activator A'	View
1di2A00	--	69	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog B	View
1di2A00	--	69	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog B	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3ADL	A	76	RISC-loading complex subunit TARBP2	View
3AJF	B	89	Suppressor of RNA silencing p3	View
4AWX	B	63	Ferrous iron transport protein C	View
4YII	A	72	Anaphase-promoting complex subunit 2	View
5CFF	F	70	Maternal effect protein staufen	View
2PTL	A	78	Protein LG	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3ADJ	A	72	Double-stranded RNA-binding protein 1	View
3F42	B	79	Nucleoid-associated protein HP_0035	View
3OW2	Y	73	50S ribosomal protein L37Ae	View
3VYX	A	95	ATP-dependent RNA helicase A	View
3VYY	A	86	ATP-dependent RNA helicase A	View
3VYY	B	84	ATP-dependent RNA helicase A	View
3VZ9	D	60	Spc24 protein	View
4MHE	A	69	C-C motif chemokine 18	View
4MHE	B	69	C-C motif chemokine 18	View
4P78	C	66	YcfA-like family protein	View
4P78	D	66	YcfA-like family protein	View
4TKP	B	63	Tripartite motif-containing protein 5	View
4TZI	B	108	Tyrosine-protein kinase Lyn	View
5AOX	B	86	Signal recognition particle 14 kDa protein	View
5AOX	D	73	Signal recognition particle 9 kDa protein	View
5AOX	E	84	Signal recognition particle 14 kDa protein	View
5D0M	C	60	RING finger protein 165	View
5T6J	A	59	Kinetochore protein SPC24	View
1JJ2	Y	73	50S ribosomal protein L37Ae	View
1MO1	A	85	HPr-like protein Crh	View
1RPY	A	81	SH2B adapter protein 2	View
1VQO	Z	73	50S ribosomal protein L37Ae	View
2DSY	A	78	Uncharacterized protein	View

Topology view of query protein [ProLego results]

5CFF : E

Topology Information