Protein Detail

Protein Information

PDBId & Chain	3LYV : E
Molecule	Ribosome-associated factor Y
Residues	47
Sequence
SSE Sequence^*(4)	`HEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ea.Ea-Cp.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3LYV_E

Protein Id: 3LYV_E

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3LYV_E

Protein Id: 3LYV_E

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3LYV	F	47	Ribosome-associated factor Y	View
d1o6wa2	--	46	u'Pre-mRNA-processing protein PRP40'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4L58	A	65	Histone-lysine N-methyltransferase 2E	View
5FFN	I	64	Subtilisin-chymotrypsin inhibitor-2A	View
1A6Y	A	77	Nuclear receptor subfamily 1 group D member 1	View
1CIT	A	89	Nuclear receptor subfamily 4 group A member 1	View
1HCQ	A	74	Estrogen receptor	View
1LAT	A	71	Glucocorticoid receptor	View
1VBW	A	68	Trypsin inhibitor BGIT	View
2C7A	A	78	Progesterone receptor	View
2HAN	A	78	Protein ultraspiracle	View
4OLN	A	70		View
4OND	A	72		View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YH9	A	64	Outer membrane protein assembly factor BamE	View
2YH9	B	66	Outer membrane protein assembly factor BamE	View
2YH9	C	65	Outer membrane protein assembly factor BamE	View
3A1P	B	85	30S ribosomal protein S19	View
3A1P	D	85	30S ribosomal protein S19	View
3EB5	A	65	Baculoviral IAP repeat-containing protein 3	View
3G20	A	114	Type II secretion system protein GspG	View
3G20	B	119	Type II secretion system protein GspG	View
3GN9	A	112	Type II secretory pathway, pseudopilin EpsG	View
3GN9	B	112	Type II secretory pathway, pseudopilin EpsG	View
3GN9	C	111	Type II secretory pathway, pseudopilin EpsG	View
3K2T	A	53	Lmo2511 protein	View
3KA5	A	55	Ribosome-associated protein Y (PSrp-1)	View
3KA5	B	57	Ribosome-associated protein Y (PSrp-1)	View
3LYV	A	57	Ribosome-associated factor Y	View
3LYV	B	56	Ribosome-associated factor Y	View
3LYV	C	56	Ribosome-associated factor Y	View
3LYV	D	44	Ribosome-associated factor Y	View
3OW2	Z	56	50S ribosomal protein L37e	View
3R45	C	61	Holliday junction recognition protein	View
3UL5	A	82	Cysteine proteinase inhibitor	View
3UL5	B	81	Cysteine proteinase inhibitor	View
3UL5	C	78	Cysteine proteinase inhibitor	View
3UL5	D	84	Cysteine proteinase inhibitor	View
4AUQ	B	57	Baculoviral IAP repeat-containing protein 7	View
4AUQ	E	57	Baculoviral IAP repeat-containing protein 7	View
4KSN	B	52	SdbC	View
4KSN	C	63	SdbC	View
4KSN	D	61	SdbC	View
4TX4	A	83	Cysteine proteinase inhibitor	View
4TX4	B	79	Cysteine proteinase inhibitor	View
4UAD	E	75	Polymerase basic protein 2	View
4YNX	A	40	Uncharacterized protein YdiE	View
4YNX	B	42	Uncharacterized protein YdiE	View
4YX1	A	66	Surface presentation of antigens protein SpaO	View
4YX1	B	65	Surface presentation of antigens protein SpaO	View
5U6Z	A	67	DNA-(apurinic or apyrimidinic site) lyase	View
1FD3	A	41	Beta-defensin 4A	View
1T92	A	108	Type II secretion system protein G	View
1VQO	1	56	50S ribosomal protein L37e	View
2QRD	B	91	Uncharacterized protein C1919.03c	View

Topology view of query protein [ProLego results]

3LYV : E

Topology Information