Protein Detail

Protein Information

PDBId & Chain	1F2L : A
Molecule	Fractalkine
Residues	64
Sequence
SSE Sequence^*(4)	`EEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea.Ca-0.Cp-Ca`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1F2L_A

Protein Id: 1F2L_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1F2L_A

Protein Id: 1F2L_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YZT	A	66	Uncharacterized protein	View
3BID	D	56	UPF0339 protein NMB1088	View
3BID	H	56	UPF0339 protein NMB1088	View
3FPU	B	66	C-C motif chemokine 3	View
3TN2	A	68	C-C motif chemokine 4	View
4MHE	C	61	C-C motif chemokine 18	View
4MHE	D	60	C-C motif chemokine 18	View
4OIJ	A	71	C-C motif chemokine 1	View
4OIJ	B	71	C-C motif chemokine 1	View
4WPY	A	88	Uncharacterized protein MT1780	View
4XT1	B	67	Fractalkine	View
4ZLT	F	62	C-C motif chemokine 3	View
5COY	A	65	C-C motif chemokine 5	View
5COY	B	65	C-C motif chemokine 5	View
5EKI	A	72	C-C motif chemokine 21	View
5EKI	B	71	C-C motif chemokine 21	View
5EKI	C	70	C-C motif chemokine 21	View
5EKI	D	71	C-C motif chemokine 21	View
5EKI	E	73	C-C motif chemokine 21	View
5EKI	F	70	C-C motif chemokine 21	View
1DOK	A	72	C-C motif chemokine 2	View
2FGG	A	83	Uncharacterized protein Rv2632c	View
2FHT	A	68	Viral macrophage inflammatory protein 2	View
2Q8R	E	66	C-C motif chemokine 14	View
2RA4	A	65	C-C motif chemokine 13	View
d1b3aa_	--	67	u'C-C motif chemokine 5'	View
d1f2la_	--	64	u'Fractalkine'	View
d1g2sa_	--	71	u'C-C motif chemokine 26'	View
d1j8ia_	--	93	u'Lymphotactin'	View
d1o80a_	--	75	u'C-X-C motif chemokine 10'	View
d1wiia_	--	85	u'Transcription elongation factor 1 homolog'	View
d2fgga1	--	83	u'Uncharacterized protein Rv2632c'	View
d2q8re_	--	66	u'C-C motif chemokine 14'	View
d2ra4a_	--	65	u'C-C motif chemokine 13'	View
1b3aA00	--	67	C-C motif chemokine 5	View
1b69A00	--	69	Transposase from transposon Tn916	View
1b3aA00	--	67	C-C motif chemokine 5	View
1b69A00	--	69	Transposase from transposon Tn916	View
1eigA00	--	73	C-C motif chemokine 24	View
1f2lA00	--	64	Fractalkine	View
1icwB00	--	66	Interleukin-8	View
1j8iA00	--	93	Lymphotactin	View
2fhtA00	--	68	Viral macrophage inflammatory protein 2	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3KU7	A	61	Cell division topological specificity factor	View
3KU7	B	58	Cell division topological specificity factor	View
3ODV	B	38	Potassium channel toxin alpha-KTx 3.1	View
3ONR	A	71	Calcium dodecin	View
3ONR	B	70	Calcium dodecin	View
3ONR	C	70	Calcium dodecin	View
3ONR	D	67	Calcium dodecin	View
3ONR	E	70	Calcium dodecin	View
3ONR	F	71	Calcium dodecin	View
3ONR	G	71	Calcium dodecin	View
3ONR	H	71	Calcium dodecin	View
3ONR	I	71	Calcium dodecin	View
3ONR	J	68	Calcium dodecin	View
3ONR	K	67	Calcium dodecin	View
3ONR	L	71	Calcium dodecin	View
3SZS	A	42	Hellethionin-D	View
3SZS	B	46	Hellethionin-D	View
3SZS	C	46	Hellethionin-D	View
3SZS	D	46	Hellethionin-D	View
3SZS	E	46	Hellethionin-D	View
3SZS	F	46	Hellethionin-D	View
3SZS	G	46	Hellethionin-D	View
4FAS	D	49	Uncharacterized protein	View
4UZ3	C	47	Cell wall-binding endopeptidase-related protein	View
5K2L	A	49	Chitinase, lysozyme	View
5L7A	A	64	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View
5L7A	B	64	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View
5L7A	C	68	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View
5L7A	D	69	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View
1BHP	A	45	Purothionin A-1	View
1H59	B	45	Insulin-like growth factor-binding protein 5	View
2PLH	A	45	Alpha-1-purothionin	View
5GJK	B	68	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3BID	A	57	UPF0339 protein NMB1088	View
3BID	B	56	UPF0339 protein NMB1088	View
3BID	C	57	UPF0339 protein NMB1088	View
3BID	E	60	UPF0339 protein NMB1088	View
3BID	F	57	UPF0339 protein NMB1088	View
3BID	G	59	UPF0339 protein NMB1088	View
3F2U	A	51	Chromobox protein homolog 1	View
3G7L	A	55	Chromo domain-containing protein 1	View
3GA8	A	67	Antitoxin MqsA	View
3GV3	A	63	Stromal cell-derived factor 1	View
3GV6	A	56	Chromobox protein homolog 6	View
3H91	A	52	Chromobox protein homolog 2	View
3H91	B	52	Chromobox protein homolog 2	View
3HI2	A	70	Antitoxin MqsA	View
3HI2	C	59	Antitoxin MqsA	View
3I8Z	A	50	E3 SUMO-protein ligase CBX4	View
3IGM	A	56	Transcription factor with AP2 domain(S), putative	View
3IGM	B	62	Transcription factor with AP2 domain(S), putative	View
3KZ5	A	47	Protein SopB	View
3KZ5	B	47	Protein SopB	View
3KZ5	E	48	Protein SopB	View
3MTS	A	62	Histone-lysine N-methyltransferase SUV39H1	View
3MTS	B	61	Histone-lysine N-methyltransferase SUV39H1	View
3MTS	C	58	Histone-lysine N-methyltransferase SUV39H1	View
3N52	A	67	C-X-C motif chemokine 2	View
3N52	B	71	C-X-C motif chemokine 2	View
3N52	C	67	C-X-C motif chemokine 2	View
3N52	D	70	C-X-C motif chemokine 2	View
3TZD	A	58	Chromobox protein homolog 3	View
3U28	B	48	H/ACA ribonucleoprotein complex subunit 3	View
3VXV	A	65	Methyl-CpG-binding domain protein 4	View
4HCS	A	67	Uncharacterized protein	View
4LG7	A	63	Methyl-CpG-binding domain protein 4	View
4QUC	A	56	Rhino	View
4X3K	A	64	Chromobox protein homolog 7	View
4X3K	B	64	Chromobox protein homolog 7	View
4XDX	A	70	Interleukin-8	View
4ZLT	L	62	C-C motif chemokine 3	View
5BT2	A	71	Methyl-CpG-binding protein 2	View
5DM6	F	144	50S ribosomal protein L11	View
5EQ0	A	55	Chromobox protein homolog 8	View
5FGO	A	59	Purine-rich binding protein-alpha, isoform E	View
5FGO	C	58	Purine-rich binding protein-alpha, isoform E	View
5FGO	E	61	Purine-rich binding protein-alpha, isoform E	View
5FGO	F	60	Purine-rich binding protein-alpha, isoform E	View
5JA1	B	66	Enterobactin biosynthesis protein YbdZ	View
1F9R	A	65	Platelet factor 4	View
1J8B	A	85	Nucleoid-associated protein HI_0442	View
1M8A	A	61	C-C motif chemokine 20	View
1NR4	A	67	C-C motif chemokine 17	View
1O7Z	A	61	C-X-C motif chemokine 10	View
1PFB	A	55	Polycomb group protein Pc	View
1Q3L	A	52	Heterochromatin protein 1	View
1ZXT	A	69	VMIP-1A	View
2AUS	B	53	Ribosome biogenesis protein Nop10	View
2CS7	A	55	Conserved domain protein	View
2H4O	A	60	SPBc2 prophage-derived uncharacterized protein YonK	View
2NYZ	D	61	Lymphotactin	View
2R3Z	A	68	C-X-C motif chemokine 10	View
2WH7	A	152	Hyaluronidase-phage associated	View
3FDT	A	51	Chromobox protein homolog 5	View
1SDF	A	67	Stromal cell-derived factor 1	View

Topology view of query protein [ProLego results]

1F2L : A

Topology Information