Protein Detail

Protein Information

PDBId & Chain	4Y8N : D
Molecule	Proteasome subunit alpha type-5
Residues	235
Sequence
SSE Sequence^*(16)	`HEEEEHHEEEEHHEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.Ep.Ea.Ca.Ha.Ca.Ea.Ea.0.Ca.Ha.Cp.Ea.0-0.0.Ea.Cp.Cp.Cp.Cp.0.Ea.0.0.0.0.Cp-0.Ep.0.0.Ea.0.Cp.Ep.0.0.0.0.Hr-Ca.0.0.0.0.0.0.0.0.0.0.0-0.0.Ep.0.0.0.0.0.Ea.0.0-0.Ea.Ea.0.Ea.0.0.Ep.0.0-Cp.Ep.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.Ea.0.0.0.0.0-0.Cp.Cp.Ep.Ep.0-0.Ca.Ep.Ea.0-0.0.0.0-0.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4Y8N_D

Protein Id: 4Y8N_D

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4Y8N_D

Protein Id: 4Y8N_D

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ep.Ea-Ea	True	3Q8J:A, 3QTE:D, 4RBX:A, 5CUM:A, 5CUM:B, 5CUM:C,	d1bnba_, d1cbha_, d1cixa_, d1dkca_, d1ewsa_, d1kqha_, d1p8ba_, d1q3ja_, d2jdqd_, 1cixA00, 1cixA00,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.0-Ea	False	4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B,	d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
3	EEH	Ea.0-Cp	True	2V89:A,	d1hnra_, d1vyxa_, d2j9ub1, d2v89a_, 1hnrA00, 1vyxA00,
5	EEEEH	Ea.Ep.Ea.Ca-0.Ea.Cp-Ep.0-0	False		d1x4sa1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1RYP	E	242	Proteasome subunit alpha type-5	View
d1rype_	--	242	u'Proteasome subunit alpha type-5'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4HRC	D	242	Proteasome subunit alpha type-5	View
4HRC	R	242	Proteasome subunit alpha type-5	View
4Y8N	R	235	Proteasome subunit alpha type-5	View
5L5A	D	235	Proteasome subunit alpha type-5	View
5L5A	R	235	Proteasome subunit alpha type-5	View
5L5Y	D	235	Proteasome subunit alpha type-5	View
5L5Y	R	235	Proteasome subunit alpha type-5	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3MI0	1	215	Proteasome subunit alpha	View
3MI0	A	215	Proteasome subunit alpha	View
3MI0	B	213	Proteasome subunit alpha	View
3MI0	D	214	Proteasome subunit alpha	View
3MI0	F	220	Proteasome subunit alpha	View
3MI0	I	216	Proteasome subunit alpha	View
3MI0	K	216	Proteasome subunit alpha	View
3MI0	M	216	Proteasome subunit alpha	View
3MI0	O	216	Proteasome subunit alpha	View
3MI0	Q	215	Proteasome subunit alpha	View
3MI0	S	216	Proteasome subunit alpha	View
3MI0	U	216	Proteasome subunit alpha	View
3MI0	W	216	Proteasome subunit alpha	View
3MI0	Y	216	Proteasome subunit alpha	View
3UNB	C	231	Proteasome subunit alpha type-2	View
3UNB	D	248	Proteasome subunit alpha type-4	View
3UNB	E	239	Proteasome subunit alpha type-7	View
3UNB	F	233	Proteasome subunit alpha type-5	View
3UNB	G	238	Proteasome subunit alpha type-1	View
3UNB	H	244	Proteasome subunit alpha type-3	View
3UNB	I	243	Proteasome subunit alpha type-6	View
3UNB	Q	231	Proteasome subunit alpha type-2	View
3UNB	R	248	Proteasome subunit alpha type-4	View
3UNB	S	239	Proteasome subunit alpha type-7	View
3UNB	T	233	Proteasome subunit alpha type-5	View
3UNB	V	244	Proteasome subunit alpha type-3	View
3UNB	W	243	Proteasome subunit alpha type-6	View
3UNF	D	233	Proteasome subunit alpha type-5	View
3UNF	E	238	Proteasome subunit alpha type-1	View
3UNF	F	244	Proteasome subunit alpha type-3	View
3UNF	G	243	Proteasome subunit alpha type-6	View
3UNF	O	230	Proteasome subunit alpha type-2	View
3UNF	P	248	Proteasome subunit alpha type-4	View
3UNF	R	233	Proteasome subunit alpha type-5	View
3UNF	S	238	Proteasome subunit alpha type-1	View
3UNF	T	244	Proteasome subunit alpha type-3	View
3UNF	U	243	Proteasome subunit alpha type-6	View
4G4S	A	241	Proteasome subunit alpha type-1	View
4G4S	C	237	Proteasome subunit alpha type-3	View
4G4S	D	220	Proteasome subunit alpha type-4	View
4G4S	E	249	Proteasome subunit alpha type-5	View
4G4S	G	246	Probable proteasome subunit alpha type-7	View
4HRC	C	241	Proteasome subunit alpha type-4	View
4HRC	F	244	Probable proteasome subunit alpha type-7	View
4HRC	G	243	Proteasome subunit alpha type-1	View
4HRC	P	244	Proteasome subunit alpha type-3	View
4HRC	T	244	Probable proteasome subunit alpha type-7	View
4HRC	U	243	Proteasome subunit alpha type-1	View
4R17	C	240	Proteasome subunit alpha type-4	View
4R17	D	235	Proteasome subunit alpha type-5	View
4R17	G	241	Proteasome subunit alpha type-1	View
4R17	P	244	Proteasome subunit alpha type-3	View
4R17	Q	240	Proteasome subunit alpha type-4	View
4R17	R	235	Proteasome subunit alpha type-5	View
4R17	U	241	Proteasome subunit alpha type-1	View
4R3O	A	244	Proteasome subunit alpha type-6	View
4R3O	B	233	Proteasome subunit alpha type-2	View
4R3O	C	250	Proteasome subunit alpha type-4	View
4R3O	D	243	Proteasome subunit alpha type-7	View
4R3O	E	234	Proteasome subunit alpha type-5	View
4R3O	G	245	Proteasome subunit alpha type-3	View
4R3O	O	244	Proteasome subunit alpha type-6	View
4R3O	P	233	Proteasome subunit alpha type-2	View
4R3O	Q	250	Proteasome subunit alpha type-4	View
4R3O	R	243	Proteasome subunit alpha type-7	View
4R3O	U	245	Proteasome subunit alpha type-3	View
4Y8N	C	240	Proteasome subunit alpha type-4	View
4Y8N	F	243	Probable proteasome subunit alpha type-7	View
4Y8N	G	241	Proteasome subunit alpha type-1	View
4Y8N	P	244	Proteasome subunit alpha type-3	View
4Y8N	Q	240	Proteasome subunit alpha type-4	View
4Y8N	T	243	Probable proteasome subunit alpha type-7	View
4Y8N	U	241	Proteasome subunit alpha type-1	View
4YA2	C	240	Proteasome subunit alpha type-4	View
4YA2	D	235	Proteasome subunit alpha type-5	View
4YA2	F	243	Probable proteasome subunit alpha type-7	View
4YA2	G	241	Proteasome subunit alpha type-1	View
4YA2	P	244	Proteasome subunit alpha type-3	View
4YA2	Q	240	Proteasome subunit alpha type-4	View
4YA2	R	235	Proteasome subunit alpha type-5	View
4YA2	T	243	Probable proteasome subunit alpha type-7	View
4YA2	U	241	Proteasome subunit alpha type-1	View
5L5A	C	240	Proteasome subunit alpha type-4	View
5L5A	F	243	Probable proteasome subunit alpha type-7	View
5L5A	G	241	Proteasome subunit alpha type-1	View
5L5A	P	244	Proteasome subunit alpha type-3	View
5L5A	Q	240	Proteasome subunit alpha type-4	View
5L5A	T	243	Probable proteasome subunit alpha type-7	View
5L5A	U	241	Proteasome subunit alpha type-1	View
5L5Y	C	240	Proteasome subunit alpha type-4	View
5L5Y	F	243	Probable proteasome subunit alpha type-7	View
5L5Y	G	241	Proteasome subunit alpha type-1	View
5L5Y	P	244	Proteasome subunit alpha type-3	View
5L5Y	Q	240	Proteasome subunit alpha type-4	View
5L5Y	T	243	Probable proteasome subunit alpha type-7	View
5L5Y	U	241	Proteasome subunit alpha type-1	View
5LE5	D	233	Proteasome subunit alpha type-5	View
5LE5	E	233	Proteasome subunit alpha type-1	View
5LE5	F	239	Proteasome subunit alpha type-3	View
5LE5	O	230	Proteasome subunit alpha type-2	View
5LE5	P	247	Proteasome subunit alpha type-4	View
5LE5	R	233	Proteasome subunit alpha type-5	View
5LE5	S	237	Proteasome subunit alpha type-1	View
5LE5	T	240	Proteasome subunit alpha type-3	View
1J2P	A	229	Proteasome subunit alpha	View
1Q5Q	A	219	Proteasome subunit alpha 1	View
1RYP	A	243	Proteasome subunit alpha type-1	View
1RYP	C	244	Proteasome subunit alpha type-3	View
1RYP	G	244	Probable proteasome subunit alpha type-7	View
1YAR	A	221	Proteasome subunit alpha	View

Topology view of query protein [ProLego results]

4Y8N : D

Topology Information