Protein Detail

Protein Information

Domain Id	d2j9ub1
DB_Source-Class	ASTRAL-1.75B, g.41.11.1
Molecule	u'Vacuolar protein-sorting-associated protein 36'
Residues	47
Sequence
SSE Sequence^*(3)	`EEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0-Cp`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2j9ub1

Protein Id: d2j9ub1

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2j9ub1

Protein Id: d2j9ub1

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2V89	A	78	V(D)J recombination-activating protein 2	View
d1hnra_	--	47	u'DNA-binding protein H-NS'	View
d1vyxa_	--	60	u'E3 ubiquitin-protein ligase MIR1'	View
d2v89a_	--	78	u'V(D)J recombination-activating protein 2'	View
1hnrA00	--	47	DNA-binding protein H-NS	View
1vyxA00	--	60	E3 ubiquitin-protein ligase MIR1	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YFV	C	60	KLLA0F05115p	View
2ZJR	U	72	50S ribosomal protein L28	View
2ZVX	A	58	Pancreatic trypsin inhibitor	View
2ZVX	B	57	Pancreatic trypsin inhibitor	View
3B08	B	58	RanBP-type and C3HC4-type zinc finger-containing protein 1	View
3B08	E	59	RanBP-type and C3HC4-type zinc finger-containing protein 1	View
3B08	H	59	RanBP-type and C3HC4-type zinc finger-containing protein 1	View
3B08	K	59	RanBP-type and C3HC4-type zinc finger-containing protein 1	View
3BYB	A	58	Kunitz-type serine protease inhibitor textilinin-1	View
3BYB	B	58	Kunitz-type serine protease inhibitor textilinin-1	View
3BYB	C	58	Kunitz-type serine protease inhibitor textilinin-1	View
3D2Q	D	69	Muscleblind-like protein 1	View
3EGG	D	66	Neurabin-2	View
3FP7	J	43	Pancreatic trypsin inhibitor	View
3GL6	A	52	Lysine-specific demethylase 5A	View
3HVQ	D	65	Neurabin-1	View
3IUF	A	32	Zinc finger protein ubi-d4	View
3KXY	Y	43	ExsE	View
3M7Q	B	61	PI-stichotoxin-She2a	View
3MJH	B	34	Early endosome antigen 1	View
3MJH	D	33	Early endosome antigen 1	View
3MMY	B	51	Nuclear pore complex protein Nup98-Nup96	View
3MMY	D	51	Nuclear pore complex protein Nup98-Nup96	View
3MMY	F	51	Nuclear pore complex protein Nup98-Nup96	View
3MMY	H	50	Nuclear pore complex protein Nup98-Nup96	View
3O7A	A	52	PHD finger protein 13	View
3OW2	T	53	50S ribosomal protein L24e	View
3PIS	A	39	Kazal-type serine protease inhibitor SPI-1	View
3PIS	D	39	Kazal-type serine protease inhibitor SPI-1	View
3TND	D	68	Antitoxin VapB	View
3TND	F	66	Antitoxin VapB	View
3U1J	E	56	Pancreatic trypsin inhibitor	View
3WUP	A	31	DNA polymerase eta	View
3ZG9	A	41	Lmo2229 protein	View
4BQD	B	65	Tissue factor pathway inhibitor	View
4DTG	K	60	Tissue factor pathway inhibitor	View
4E1P	A	55	Nucleoid-associated protein Lsr2	View
4E1P	B	56	Nucleoid-associated protein Lsr2	View
4EAZ	C	32	Transcription cofactor vestigial-like protein 1	View
4EAZ	D	31	Transcription cofactor vestigial-like protein 1	View
4LM6	A	62	Cryptophyte phycocyanin alpha chain	View
4LM6	C	62	Cryptophyte phycocyanin alpha chain	View
4LMS	A	80	Phycocyanin645 alpha subunit	View
4LMX	A	61	Phycoerythrin550 alpha subunit	View
4LMX	C	65	Phycoerythrin550 alpha subunit	View
4LMX	E	65	Phycoerythrin550 alpha subunit	View
4LMX	G	64	Phycoerythrin550 alpha subunit	View
4LMX	I	65	Phycoerythrin550 alpha subunit	View
4LMX	K	65	Phycoerythrin550 alpha subunit	View
4MIT	E	40	Serine/threonine protein kinase PAK, putative	View
4MIT	F	35	Serine/threonine protein kinase PAK, putative	View
4MIT	G	43	Serine/threonine protein kinase PAK, putative	View
4MIT	H	42	Serine/threonine protein kinase PAK, putative	View
4MMS	A	81	Fusion glycoprotein F0	View
4MMS	C	77	Fusion glycoprotein F0	View
4MMS	E	81	Fusion glycoprotein F0	View
4MPI	A	44	Class I chitinase	View
4MPI	B	45	Class I chitinase	View
4NTW	B	59	Kunitz-type neurotoxin MitTx-alpha	View
4Q4W	4	57	Genome polyprotein	View
4QF2	A	53	Bromodomain adjacent to zinc finger domain protein 2A	View
4QF2	B	51	Bromodomain adjacent to zinc finger domain protein 2A	View
4QF2	C	52	Bromodomain adjacent to zinc finger domain protein 2A	View
4QF2	D	53	Bromodomain adjacent to zinc finger domain protein 2A	View
4QF3	A	57	Bromodomain adjacent to zinc finger domain protein 2B	View
4QF3	B	57	Bromodomain adjacent to zinc finger domain protein 2B	View
4R2Y	A	64	Anaphase-promoting complex subunit 11	View
4R2Y	B	59	Anaphase-promoting complex subunit 11	View
4R2Y	C	65	Anaphase-promoting complex subunit 11	View
4R2Y	D	62	Anaphase-promoting complex subunit 11	View
4U30	W	53	Protein AMBP	View
4U30	X	53	Protein AMBP	View
4U30	Y	53	Protein AMBP	View
4U30	Z	53	Protein AMBP	View
4U32	X	54	Kunitz-type protease inhibitor 2	View
4UR6	A	64	Ice-structuring protein	View
4UR6	B	62	Ice-structuring protein	View
4WJW	A	68	Chitin biosynthesis protein CHS5	View
4WP4	A	43	Pro-hevein	View
4WXA	F	49	EKC/KEOPS complex subunit GON7	View
4XKL	D	31	Calcium-binding and coiled-coil domain-containing protein 2	View
4Z0O	A	55	Zinc finger CW-type PWWP domain protein 2	View
5D0I	B	51	RING finger protein 165	View
5E4X	A	50	Signal recognition particle 43 kDa protein, chloroplastic	View
5I72	A	51	RING finger protein Z	View
5I72	B	53	RING finger protein Z	View
5IYZ	E	123	Stathmin-4	View
5JB5	A	57	Pancreatic trypsin inhibitor	View
5JB5	B	58	Pancreatic trypsin inhibitor	View
5JB5	C	58	Pancreatic trypsin inhibitor	View
5JBT	Y	38	Amyloid-like protein 2	View
5JG6	A	61	Anaphase-promoting complex subunit 11	View
5JG6	D	66	Anaphase-promoting complex subunit 11	View
5KX5	E	121	Stathmin-4	View
5T59	C	32	KLLA0B13629p	View
5T59	F	35	KLLA0B13629p	View
5TDR	A	70	SET domain-containing protein 3	View
1AAP	A	56	Amyloid beta A4 protein	View
1BRB	I	51	Pancreatic trypsin inhibitor	View
1BUN	B	61	Kunitz-type serine protease inhibitor homolog beta-bungarotoxin B2 chain	View
1D0D	A	60	Tick anticoagulant peptide	View
1D4M	4	61	Genome polyprotein	View
1DTX	A	58	Kunitz-type serine protease inhibitor homolog alpha-dendrotoxin	View
1FAK	I	55	Pancreatic trypsin inhibitor	View
1G3J	B	41	Transcription factor 7-like 1-A	View
1G6X	A	58	Pancreatic trypsin inhibitor	View
1HG7	A	66	Type-3 ice-structuring protein HPLC 12	View
1HXS	4	68	Genome polyprotein	View
1J8E	A	44	Prolow-density lipoprotein receptor-related protein 1	View
1JY2	O	51	Fibrinogen beta chain	View
1KTH	A	58	Collagen alpha-3(VI) chain	View
1UCS	A	64	Ice-structuring protein RD1	View
1VPZ	A	55	Carbon storage regulator homolog	View
1VQO	U	53	50S ribosomal protein L24e	View
1XG0	A	75	Phycoerythrin alpha-3 chain, chloroplastic	View
1XG0	B	67	Phycoerythrin alpha-2 chain, chloroplastic	View
1XU1	R	38	Tumor necrosis factor receptor superfamily member 13B	View
1Y62	A	56	Kunitz-type conkunitzin-S1	View
2B9D	A	52	Protein E7	View
2BTI	A	57		View
2DS5	A	43	ATP-dependent Clp protease ATP-binding subunit ClpX	View
2PUY	A	59	PHD finger protein 21A	View
2UUY	B	52	Tryptase inhibitor	View
2V89	A	78	V(D)J recombination-activating protein 2	View
2VUT	I	42	Nitrogen regulatory protein areA	View
3AUB	A	58		View
5M4V	A	57		View

Topology view of query protein [ProLego results]

d2j9ub1

Topology Information