Protein Detail

Protein Information

Domain Id	d1svdm1
DB_Source-Class	ASTRAL-1.75B, d.73.1.1
Molecule	u'Ribulose bisphosphate carboxylase small chain'
Residues	108
Sequence
SSE Sequence^*(6)	`HEEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ea.Ca.Ca.Ea-0.Cp.0.Cp-Hr.Ea.0-Cp.0-Ca`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d1svdm1

Protein Id: d1svdm1

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d1svdm1

Protein Id: d1svdm1

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-0	False	3K65:A,	d1dwka2, d1h5oa_, 1h5oA00,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
4	HEEH	Ca.Ea.Ca-0.Cp-Hr	False		d2ctda1,
4	EEHE	Ea.Ca.Ca-Cp.0-Ea	True	4GI3:C, 4L5N:C, 1R0R:I, 2BAY:A, 2F3C:I, 5MNJ:D,	d1chca_, d1iw4a_, d1pcea_, d1r0ri_, d2baya_, 1chcA00, 1chcA00, 1iw4A00, 1r0rI00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3RUB	S	123	Ribulose bisphosphate carboxylase small chain, chloroplastic	View
3ZXW	B	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	D	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	F	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	H	93	Ribulose bisphosphate carboxylase small subunit	View
4MKV	S	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	T	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	U	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	V	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
8RUC	I	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	J	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	K	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	L	123	Ribulose bisphosphate carboxylase small chain	View
1WDD	S	121	Ribulose bisphosphate carboxylase small chain, chloroplastic	View
5IU0	I	123	Ribulose bisphosphate carboxylase small chain 1B, chloroplastic	View
d1wdds_	--	121	u'Ribulose bisphosphate carboxylase small chain, chloroplastic'	View
1svdM00	--	108	Ribulose bisphosphate carboxylase small chain	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3C0F	B	80	Uncharacterized protein AF_1514	View
3RUB	S	123	Ribulose bisphosphate carboxylase small chain, chloroplastic	View
3ZXW	B	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	D	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	F	93	Ribulose bisphosphate carboxylase small subunit	View
3ZXW	H	93	Ribulose bisphosphate carboxylase small subunit	View
4ACV	A	119	Prophage LambdaLm01, antigen B	View
4ACV	B	123	Prophage LambdaLm01, antigen B	View
4HLB	A	94	Uncharacterized protein	View
4MKV	S	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	T	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	U	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4MKV	V	123	Ribulose bisphosphate carboxylase small chain 3A, chloroplastic	View
4NDS	A	94	Alpha-galactosyl-binding lectin	View
4NDS	B	94	Alpha-galactosyl-binding lectin	View
5HL8	C	78	Type II secretion system protein L	View
5HL8	D	68	Type II secretion system protein L	View
8RUC	I	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	J	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	K	123	Ribulose bisphosphate carboxylase small chain	View
8RUC	L	123	Ribulose bisphosphate carboxylase small chain	View
1GK8	I	125	Ribulose bisphosphate carboxylase small chain 1, chloroplastic	View
1RBL	I	109	Ribulose bisphosphate carboxylase small chain	View
1UV7	A	74	Type II secretion system protein M	View
1UZD	C	129	Ribulose bisphosphate carboxylase small chain 2, chloroplastic	View
1WDD	S	121	Ribulose bisphosphate carboxylase small chain, chloroplastic	View
2W7V	A	80	Type II secretion system protein L	View
5IU0	I	123	Ribulose bisphosphate carboxylase small chain 1B, chloroplastic	View

Topology view of query protein [ProLego results]

d1svdm1

Topology Information