Protein Detail

Protein Information

Domain Id	1chcA00
DB_Source-Class	CATH 3.5, 3.30.40.10
Molecule	E3 ubiquitin-protein ligase ICP0
Residues	68
Sequence
SSE Sequence^*(4)	`EEHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Ca-Cp.0-Ea`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1chcA00

Protein Id: 1chcA00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1chcA00

Protein Id: 1chcA00

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4GI3	C	57	Greglin	View
4L5N	C	50	Early protein GP1B	View
1R0R	I	51	Ovomucoid	View
2BAY	A	56	Pre-mRNA-processing factor 19	View
2F3C	I	46	Thrombin inhibitor infestin	View
5MNJ	D	63	Protein Mdm4	View
d1chca_	--	68	u'E3 ubiquitin-protein ligase ICP0'	View
d1iw4a_	--	55	u'Trypsin inhibitor'	View
d1pcea_	--	60	u'Serine protease inhibitor Kazal-type 4'	View
d1r0ri_	--	51	u'Ovomucoid'	View
d2baya_	--	56	u'Pre-mRNA-processing factor 19'	View
1chcA00	--	68	E3 ubiquitin-protein ligase ICP0	View
1iw4A00	--	55	Trypsin inhibitor	View
1r0rI00	--	51	Ovomucoid	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3FRY	A	73	Probable copper-exporting P-type ATPase A	View
3K2T	A	53	Lmo2511 protein	View
3KA5	A	55	Ribosome-associated protein Y (PSrp-1)	View
3LYV	A	57	Ribosome-associated factor Y	View
3LYV	B	56	Ribosome-associated factor Y	View
3LYV	C	56	Ribosome-associated factor Y	View
3LYV	D	44	Ribosome-associated factor Y	View
4E6K	H	33	Uncharacterized protein	View
4HGU	A	40	Silk protease inhibitor 2	View
4P1M	B	107	Cell division protein ZapA	View
4YNX	A	40	Uncharacterized protein YdiE	View
4YNX	B	42	Uncharacterized protein YdiE	View
1HPT	A	56	Serine protease inhibitor Kazal-type 1	View
1O7Z	A	61	C-X-C motif chemokine 10	View
1P9G	A	40	Antifungal peptide 2	View
1TGS	I	55	Serine protease inhibitor Kazal-type 1	View
2ERW	A	53	Thrombin inhibitor infestin	View
3NIR	A	46	Crambin	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XGF	C	216	Long-tail fiber protein p37	View
2YVR	A	45	Transcription intermediary factor 1-beta	View
2YVR	B	45	Transcription intermediary factor 1-beta	View
3DDT	A	48	E3 ubiquitin-protein ligase TRIM63	View
3DDT	B	47	E3 ubiquitin-protein ligase TRIM63	View
3DDT	C	44	E3 ubiquitin-protein ligase TRIM63	View
3EGR	A	62	Phenylacetic acid degradation B	View
3OVO	A	56	Ovomucoid	View
3Q1D	A	47	Tripartite motif-containing protein 54	View
3ZOQ	B	48	Putative uncharacterized protein 0.8	View
3ZOQ	C	53	Putative uncharacterized protein 0.8	View
4L5N	D	49	Early protein GP1B	View
4L5N	E	47	Early protein GP1B	View
4L5N	F	48	Early protein GP1B	View
5K3Q	A	43	Tripartite motif-containing protein 5	View
5K3Q	B	43	Tripartite motif-containing protein 5	View
5K3Q	C	42	Tripartite motif-containing protein 5	View
5K3Q	D	41	Tripartite motif-containing protein 5	View
5TDA	A	71	E3 ubiquitin-protein ligase UBR2	View
5TDC	A	70	E3 ubiquitin-protein ligase UBR1	View
1DGW	X	76	Canavalin	View
1H59	B	45	Insulin-like growth factor-binding protein 5	View
1LDT	L	46	Leech-derived tryptase inhibitor C	View
4NJC	A	58		View

Topology view of query protein [ProLego results]

1chcA00

Topology Information