Protein Detail

Protein Information

Domain Id	1q5yD00
DB_Source-Class	CATH 3.5, 3.30.70.1150
Molecule	Nickel-responsive regulator
Residues	80
Sequence
SSE Sequence^*(6)	`EHEEHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ea.Ca.Ca-Ep.Cp.0.Ep-Ea.Ha.0-Cp.0-Ea`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1q5yD00

Protein Id: 1q5yD00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1q5yD00

Protein Id: 1q5yD00

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
4	EHEE	Ca.Ca.Ea-Ep.Cp-Ea	True	2YIZ:A, 2YIZ:B, 2YIZ:C, 2YIZ:D, 3QKB:A, 3QKB:B, 3QKB:C, 3QKB:D, 3QKB:E, 2CC6:A, 2FMA:A, 2UX9:A, 2VXA:A, 5JG9:A,	d1bmra_, d2cc6a_, d2fmaa_, d2vyxa_, 2cc6A00,
4	HEEH	Ca.Ea.Ca-Cp.0-Ha	True	3FRY:A,	d1hywa_, d1pu1a_, 1hywA00, 1pu1A00,
5	HEEHE	Ca.Ea.Ca.Ca-Cp.0.Ep-Ha.0-0	True	3BYP:A, 3BYP:B, 5HOK:A, 5HOK:B, 5HOK:C, 5HOK:D,	d3bypa1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1Q5Y	A	84	Nickel-responsive regulator	View
d1q5ya_	--	84	u'Nickel-responsive regulator'	View
d1rwua_	--	87	u'UPF0250 protein YbeD'	View
1rwuA00	--	87	UPF0250 protein YbeD	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2X3D	A	90	Uncharacterized protein	View
2X3D	B	90	Uncharacterized protein	View
2X3D	C	90	Uncharacterized protein	View
2X3D	D	91	Uncharacterized protein	View
2X3D	E	90	Uncharacterized protein	View
2X3D	F	88	Uncharacterized protein	View
2X3D	G	90	Uncharacterized protein	View
2X3D	H	91	Uncharacterized protein	View
2YY3	A	89	Elongation factor 1-beta	View
2YY3	B	89	Elongation factor 1-beta	View
2YY3	C	89	Elongation factor 1-beta	View
2ZBC	A	78	Uncharacterized protein	View
2ZBC	B	78	Uncharacterized protein	View
2ZBC	C	78	Uncharacterized protein	View
2ZBC	D	78	Uncharacterized protein	View
2ZBC	E	78	Uncharacterized protein	View
2ZBC	F	78	Uncharacterized protein	View
2ZBC	G	78	Uncharacterized protein	View
2ZBC	H	78	Uncharacterized protein	View
3BPD	A	90	Uncharacterized protein	View
3BPD	B	90	Uncharacterized protein	View
3BPD	C	90	Uncharacterized protein	View
3BPD	D	90	Uncharacterized protein	View
3BPD	E	90	Uncharacterized protein	View
3BPD	F	91	Uncharacterized protein	View
3BPD	G	90	Uncharacterized protein	View
3BPD	H	90	Uncharacterized protein	View
3BPD	I	89	Uncharacterized protein	View
3BPD	J	90	Uncharacterized protein	View
3BPD	K	90	Uncharacterized protein	View
3BPD	L	90	Uncharacterized protein	View
3BPD	M	90	Uncharacterized protein	View
3BPD	N	89	Uncharacterized protein	View
3BZQ	A	99	Nitrogen regulatory protein P-II	View
3CE8	A	87	Uncharacterized protein	View
3CIM	A	94	Carbon dioxide-concentrating mechanism protein CcmK homolog 2	View
3CIM	B	93	Carbon dioxide-concentrating mechanism protein CcmK homolog 2	View
3CIM	C	95	Carbon dioxide-concentrating mechanism protein CcmK homolog 2	View
3CJK	A	68	Copper transport protein ATOX1	View
3CJK	B	75	Copper-transporting ATPase 1	View
3CNQ	P	71	Subtilisin BPN'	View
3D3B	J	87	30S ribosomal protein S10	View
3DFE	A	81	Uncharacterized protein	View
3DFE	B	81	Uncharacterized protein	View
3DFE	C	80	Uncharacterized protein	View
3DFE	D	81	Uncharacterized protein	View
3DFE	E	80	Uncharacterized protein	View
3DFE	F	79	Uncharacterized protein	View
3DXS	X	74	Copper-transporting ATPase RAN1	View
3E17	A	80	Tight junction protein ZO-2	View
3E17	B	79	Tight junction protein ZO-2	View
3E8O	A	99	Uncharacterized protein	View
3E8O	B	98	Uncharacterized protein	View
3GZ7	A	96	Uncharacterized protein	View
3GZ7	B	95	Uncharacterized protein	View
3H7H	B	95	Transcription elongation factor SPT5	View
3IWL	A	66	Copper transport protein ATOX1	View
3L7P	A	83	Putative nitrogen regulatory protein PII	View
3L7P	B	88	Putative nitrogen regulatory protein PII	View
3L7P	C	91	Putative nitrogen regulatory protein PII	View
3L7P	D	90	Putative nitrogen regulatory protein PII	View
3L7P	E	85	Putative nitrogen regulatory protein PII	View
3L7P	F	88	Putative nitrogen regulatory protein PII	View
3LF0	A	99	Nitrogen regulatory protein P-II	View
3LF0	C	101	Nitrogen regulatory protein P-II	View
3MGJ	A	93	Uncharacterized protein MJ1480	View
3MGJ	B	83	Uncharacterized protein MJ1480	View
3NCQ	A	112	Nitrogen regulatory protein P-II (GlnB-2)	View
3NCQ	C	115	Nitrogen regulatory protein P-II (GlnB-2)	View
3O5N	H	93	SH3 and multiple ankyrin repeat domains protein 3	View
3O5T	B	100	Transcriptional regulator	View
3OFG	A	89	Boca/MESD chaperone for YWTD beta-propeller-EGF	View
3OFG	B	85	Boca/MESD chaperone for YWTD beta-propeller-EGF	View
3OQ2	A	99	CRISPR-associated endoribonuclease Cas2	View
3OQ2	B	102	CRISPR-associated endoribonuclease Cas2	View
3OW2	X	142	50S ribosomal protein L32e	View
3P5T	L	76	Cleavage and polyadenylation specificity factor subunit 6	View
3P5T	M	81	Cleavage and polyadenylation specificity factor subunit 6	View
3P5T	N	80	Cleavage and polyadenylation specificity factor subunit 6	View
3P5T	O	81	Cleavage and polyadenylation specificity factor subunit 6	View
3P5T	P	79	Cleavage and polyadenylation specificity factor subunit 6	View
3P5T	Q	80	Cleavage and polyadenylation specificity factor subunit 6	View
3R2C	J	79	30S ribosomal protein S10	View
3R2C	K	80	30S ribosomal protein S10	View
3T5S	A	97	Macrophage migration inhibitory factor	View
3ULH	A	82	THO complex subunit 4	View
3W1Y	C	90	30S ribosomal protein S10	View
3ZNU	A	94	Muconolactone Delta-isomerase	View
3ZNU	B	94	Muconolactone Delta-isomerase	View
3ZNU	C	94	Muconolactone Delta-isomerase	View
3ZNU	D	94	Muconolactone Delta-isomerase	View
3ZNU	E	94	Muconolactone Delta-isomerase	View
3ZNU	F	94	Muconolactone Delta-isomerase	View
3ZNU	G	94	Muconolactone Delta-isomerase	View
3ZNU	H	92	Muconolactone Delta-isomerase	View
3ZNU	I	91	Muconolactone Delta-isomerase	View
3ZNU	J	91	Muconolactone Delta-isomerase	View
4A4J	A	69	Probable copper-transporting ATPase PacS	View
4AXJ	A	87	Ethanolamine carboxysome strutural protein	View
4AXJ	C	86	Ethanolamine carboxysome strutural protein	View
4EFA	C	106	V-type proton ATPase subunit C	View
4ES1	A	95	CRISPR-associated endonuclease Cas2	View
4GVB	B	74	KP6 killer toxin	View
4ID8	A	65	Putative ferredoxin	View
4JCU	A	132	5-carboxymethyl-2-hydroxymuconate isomerase	View
4LIR	A	76	Nucleoporin NUP53	View
4LIR	B	80	Nucleoporin NUP53	View
4LVN	P	81	Subtilisin-like serine protease	View
4OX8	A	90	Carbon dioxide-concentrating mechanism protein CcmK	View
4OX8	B	87	Carbon dioxide-concentrating mechanism protein CcmK	View
4OX8	C	87	Carbon dioxide-concentrating mechanism protein CcmK	View
4OX8	D	87	Carbon dioxide-concentrating mechanism protein CcmK	View
4OX8	E	87	Carbon dioxide-concentrating mechanism protein CcmK	View
4OX8	F	87	Carbon dioxide-concentrating mechanism protein CcmK	View
4OZJ	A	104	PII family protein glnK2	View
4P7T	B	86	Propanediol utilization protein PduA	View
4P7T	C	74	Propanediol utilization protein PduA	View
4P7T	D	86	Propanediol utilization protein PduA	View
4P7T	E	86	Propanediol utilization protein PduA	View
4PWU	A	75	Modulator protein MzrA	View
4PWU	B	76	Modulator protein MzrA	View
4PWU	C	77	Modulator protein MzrA	View
4PWU	D	75	Modulator protein MzrA	View
4QR2	A	83	Uncharacterized protein	View
4QR2	B	82	Uncharacterized protein	View
4R25	A	114	Nitrogen regulatory PII-like protein	View
4TNO	A	84	CRISPR-associated endoribonuclease Cas2	View
4USI	B	111	Nitrogen regulatory protein PII	View
4WK1	A	92	Uncharacterized protein	View
4Y2M	A	65	Putative metal-binding transport protein	View
4ZA1	C	92	NosA	View
4ZOQ	A	61	Intracellular serine protease	View
4ZOQ	B	60	Intracellular serine protease	View
4ZOQ	C	60	Intracellular serine protease	View
4ZOQ	D	60	Intracellular serine protease	View
4ZOQ	E	61	Intracellular serine protease	View
4ZOQ	G	62	Intracellular serine protease	View
5A6W	A	71	Resistance protein Pikp-1	View
5A6W	B	73	Resistance protein Pikp-1	View
5B08	B	104	Olivetolic acid cyclase	View
5CYJ	A	89	RNA-binding protein with multiple splicing	View
5CYJ	B	89	RNA-binding protein with multiple splicing	View
5D4N	C	98	Nitrogen regulatory protein P-II	View
5D6V	A	90	Propanediol utilization protein	View
5FII	A	76	Phenylalanine-4-hydroxylase	View
5FII	B	78	Phenylalanine-4-hydroxylase	View
5FII	C	76	Phenylalanine-4-hydroxylase	View
5FII	D	78	Phenylalanine-4-hydroxylase	View
5G4D	A	79	CRISPR-associated endoribonuclease Cas2	View
5L38	A	91	Propanediol utilization protein PduA	View
5L38	B	86	Propanediol utilization protein PduA	View
5L38	C	90	Propanediol utilization protein PduA	View
5L38	D	89	Propanediol utilization protein PduA	View
5L38	E	85	Propanediol utilization protein PduA	View
5L38	F	90	Propanediol utilization protein PduA	View
5L38	G	90	Propanediol utilization protein PduA	View
5L38	H	88	Propanediol utilization protein PduA	View
5L38	I	87	Propanediol utilization protein PduA	View
5L38	J	89	Propanediol utilization protein PduA	View
5L38	K	86	Propanediol utilization protein PduA	View
5L38	L	86	Propanediol utilization protein PduA	View
5L8R	C	80	Photosystem I iron-sulfur center	View
5TKZ	A	89	Uncharacterized protein	View
5TKZ	B	89	Uncharacterized protein	View
5UZN	A	80	Glorund, isoform B	View
1JB0	C	80	Photosystem I iron-sulfur center	View
1A7G	E	82	Regulatory protein E2	View
1CC8	A	72	Metal homeostasis factor ATX1	View
1CQM	A	98	30S ribosomal protein S6	View
1EAY	C	67	Chemotaxis protein CheA	View
1F60	B	90	Elongation factor 1-beta	View
1F9F	A	76	Regulatory protein E2	View
1FXR	A	64	Ferredoxin-1	View
1HWU	A	99	PII protein	View
1IQZ	A	81	Ferredoxin	View
1J27	A	98	Putative uncharacterized protein	View
1OSD	A	72	Periplasmic mercury ion-binding protein	View
1P27	B	92	RNA-binding protein 8A	View
1SPB	P	71	Subtilisin BPN'	View
1V5I	B	76	Serine proteinase inhibitor IA-1	View
1VJQ	A	71		View
1VJW	A	59	Ferredoxin	View
1ZPW	X	82	CRISPR-associated endonuclease Cas2 2	View
2CVI	A	83	75aa long hypothetical regulatory protein AsnC	View
2CZ4	A	99	Uncharacterized protein	View
2DJW	A	80	Probable transcriptional regulator, AsnC family	View
2E7V	A	115	Transmembrane protease serine 11D	View
2EG2	A	95	Nitrogen regulatory protein P-II	View
2G0C	A	68	ATP-dependent RNA helicase DbpA	View
2GW8	A	99	Nitrogen regulatory protein P-II	View
2J5A	A	106	30S ribosomal protein S6	View
2NZC	A	79	Uncharacterized protein	View
2O66	A	107	Nitrogen regulatory protein P-II homolog	View
2Q79	A	74	Regulatory protein E2	View
2QIF	A	69	Copper chaperone CopZ	View
2QSW	A	89	Methionine import ATP-binding protein MetN 2	View
2RCZ	A	79	Tight junction protein ZO-1	View
2RIL	A	91	Antibiotic biosynthesis monooxygenase	View
2VSP	A	83	Na(+)/H(+) exchange regulatory cofactor NHE-RF3	View
2WKB	A	106	Macrophage migration inhibitory factor homolog, putative	View
2WKF	A	101	Macrophage migration inhibitory factor homologue	View
4RJV	A	83		View
4YDX	A	67	Copper transport protein ATOX1	View

Topology view of query protein [ProLego results]

1q5yD00

Topology Information