Protein Detail

Protein Information

Domain Id	d2fmaa_
DB_Source-Class	ASTRAL-1.75B, d.230.3.1
Molecule	u'Amyloid beta A4 protein'
Residues	59
Sequence
SSE Sequence^*(4)	`EHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ea-Ep.Cp-Ea`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2fmaa_

Protein Id: d2fmaa_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2fmaa_

Protein Id: d2fmaa_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YIZ	A	68	Uncharacterized protein	View
2YIZ	B	68	Uncharacterized protein	View
2YIZ	C	68	Uncharacterized protein	View
2YIZ	D	68	Uncharacterized protein	View
3QKB	A	91	Uncharacterized protein	View
3QKB	B	90	Uncharacterized protein	View
3QKB	C	89	Uncharacterized protein	View
3QKB	D	90	Uncharacterized protein	View
3QKB	E	89	Uncharacterized protein	View
2CC6	A	64	Uncharacterized protein	View
2FMA	A	59	Amyloid beta A4 protein	View
2UX9	A	66	Dodecin	View
2VXA	A	67	Dodecin	View
5JG9	A	46		View
d1bmra_	--	67	u'Alpha-like toxin Lqh3'	View
d2cc6a_	--	64	u'Uncharacterized protein'	View
d2vyxa_	--	68	u'Dodecin'	View
2cc6A00	--	64	Uncharacterized protein	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YC1	C	65	Beta-mammal toxin Cn2	View
2YC1	F	65	Beta-mammal toxin Cn2	View
2YIZ	A	68	Uncharacterized protein	View
2YIZ	B	68	Uncharacterized protein	View
2YIZ	C	68	Uncharacterized protein	View
2YIZ	D	68	Uncharacterized protein	View
3KU7	A	61	Cell division topological specificity factor	View
3KU7	B	58	Cell division topological specificity factor	View
3ODV	A	38	Potassium channel toxin alpha-KTx 3.1	View
3ODV	B	38	Potassium channel toxin alpha-KTx 3.1	View
3ONR	A	71	Calcium dodecin	View
3ONR	B	70	Calcium dodecin	View
3ONR	C	70	Calcium dodecin	View
3ONR	D	67	Calcium dodecin	View
3ONR	E	70	Calcium dodecin	View
3ONR	F	71	Calcium dodecin	View
3ONR	G	71	Calcium dodecin	View
3ONR	H	71	Calcium dodecin	View
3ONR	I	71	Calcium dodecin	View
3ONR	J	68	Calcium dodecin	View
3ONR	K	67	Calcium dodecin	View
3ONR	L	71	Calcium dodecin	View
3PSM	A	47	Defensin	View
3PSM	B	47	Defensin	View
3QKB	A	91	Uncharacterized protein	View
3QKB	B	90	Uncharacterized protein	View
3QKB	C	89	Uncharacterized protein	View
3QKB	D	90	Uncharacterized protein	View
3QKB	E	89	Uncharacterized protein	View
4AAZ	A	47	Flower-specific defensin	View
4AAZ	B	47	Flower-specific defensin	View
4AEA	A	67	Alpha-elapitoxin-Nk2a	View
4AEA	B	67	Alpha-elapitoxin-Nk2a	View
4HHF	A	65	Alpha-toxin OD1	View
4LFT	A	64	Alpha-elapitoxin-Dpp2a	View
4LFT	B	72	Alpha-elapitoxin-Dpp2a	View
4UJ0	A	48	Uncharacterized protein	View
4UJ0	B	47	Uncharacterized protein	View
1AHO	A	64	Alpha-mammal toxin AaH2	View
1HPI	A	71	High-potential iron-sulfur protein isozyme 2	View
1KVE	B	77	Salt-mediated killer protoxin 1	View
1NPI	A	61	Beta-mammal/insect toxin Ts1	View
1SNB	A	64	Alpha-mammal toxin BmK-M8	View
2A7T	A	64	Neurotoxin BTN	View
2CC6	A	64	Uncharacterized protein	View
2FMA	A	59	Amyloid beta A4 protein	View
2SN3	A	65	Toxin CsEv3	View
2UX9	A	66	Dodecin	View
2VXA	A	67	Dodecin	View
5JG9	A	46		View
1CTX	A	71	Alpha-cobratoxin	View

Topology view of query protein [ProLego results]

d2fmaa_

Topology Information