Protein Detail

Protein Information

PDBId & Chain	1JYO : A
Molecule	Chaperone protein sicP
Residues	130
Sequence
SSE Sequence^*(8)	`HEEEHEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.Ea.0.Ca.Ea.Ca-Ca.0.0.0.Cp.Cp-Cp.0.0.Ea.Ha-0.0.0.Cp-0.0.Ca-0.0-Hr`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1JYO_A

Protein Id: 1JYO_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1JYO_A

Protein Id: 1JYO_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	0.Ea-Ca	False		d1hn6a_, 1hn6A00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
4	HEEE	0.Ea.Ea-Ca.0-Cp	True	3G20:A, 3G20:B, 3GN9:A, 3GN9:B, 3GN9:C, 1T92:A,	d1t92a_,
4	EEEH	Ea.Ea.0-0.0-0	True	3IGM:A, 3IGM:B, 5DM6:F, 5FGO:A, 5FGO:C, 5FGO:E, 5FGO:F, 2WH7:A,	d1pd0a5,
4	EHEE	0.Ca.Ea-0.Cp-Ea	True	2YC1:C, 2YC1:F, 3PSM:A, 3PSM:B, 4AAZ:A, 4AAZ:B, 4HHF:A, 4UJ0:A, 4UJ0:B, 1NPI:A, 2A7T:A, 2SN3:A,	d1ayja_, d1brza_, d1myna_, d1pe4a_, d3psma_, d4aaza_, 1ayjA00, 1brzA00, 1ayjA00, 1brzA00, 1mr4A00, 1mynA00, 1npiA00, 1pe4A00, 2sn3A00,
5	EHEEH	0.Ca.Ea.Ca-0.Cp.Cp-Ea.Ha-Cp	False		2fmrA00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
d1jyoa_	--	130	u'Chaperone protein sicP'	View
1jyoA00	--	130	Chaperone protein sicP	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3EPU	A	134	Putative cytoplasmic protein	View
3EPU	B	133	Putative cytoplasmic protein	View
3I24	B	139	HIT family hydrolase	View
3I4S	A	134	Blr8122 protein	View
3I4S	B	134	Blr8122 protein	View
3KSV	A	141	Uncharacterized protein	View
3KXY	A	133	Exoenzyme S synthesis protein C	View
3KXY	B	132	Exoenzyme S synthesis protein C	View
3KXY	C	133	Exoenzyme S synthesis protein C	View
3KXY	D	130	Exoenzyme S synthesis protein C	View
3KXY	E	133	Exoenzyme S synthesis protein C	View
3KXY	F	132	Exoenzyme S synthesis protein C	View
3KXY	G	133	Exoenzyme S synthesis protein C	View
3KXY	H	130	Exoenzyme S synthesis protein C	View
3KXY	I	133	Exoenzyme S synthesis protein C	View
3KXY	J	129	Exoenzyme S synthesis protein C	View
3KXY	K	133	Exoenzyme S synthesis protein C	View
3KXY	L	130	Exoenzyme S synthesis protein C	View
3LB5	A	131	Hit-like protein involved in cell-cycle regulation	View
3LB5	B	134	Hit-like protein involved in cell-cycle regulation	View
3LB5	C	136	Hit-like protein involved in cell-cycle regulation	View
3LB5	D	129	Hit-like protein involved in cell-cycle regulation	View
3O0M	A	139	HIT family protein	View
3O0M	B	135	HIT family protein	View
3OHE	A	131	Histidine triad (HIT) protein	View
3OHE	B	131	Histidine triad (HIT) protein	View
3P0T	A	136	Uncharacterized protein	View
3P0T	B	136	Uncharacterized protein	View
3R6F	A	130	HIT FAMILY PROTEIN	View
3TU3	A	119	SpcU	View
4GF3	A	123	YopH chaperone SycH protein homolog	View
4JMF	C	116	Probable chaperone	View
5FR7	A	145	Uncharacterized protein ybjN	View
1S28	A	127	ORF1	View
1VR9	A	117	Uncharacterized protein	View
1XKP	B	119	Chaperone protein SycN	View
2EO4	A	149	Uncharacterized protein	View
2FM8	A	134	Surface presentation of antigens protein SpaK	View
2I46	A	152	Adrenocortical dysplasia protein homolog	View

Topology view of query protein [ProLego results]

1JYO : A

Topology Information