ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain1D2O : A
MoleculeCollagen adhesin
Residues187
Sequence
SSE Sequence*(18) EEEEEEEEEEEEEEEEEE
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ea.Ea.Ea.0.Ea.0.Ea.Ea.0.Ea.Ea.Ea.0.Ea.0.Ea.Ea-0.Ep.0.0.0.0.Ep.Ep.0.Ep.Ep.0.0.0.0.Ep-Ea.0.0.Ea.0.0.Ea.0.0.Ea.0.0.Ea.0.0-0.0.0.0.0.0.0.0.0.0.0.0.0.0-0.Ea.0.Ea.0.0.0.Ea.0.0.Ea.0.0-Ep.0.0.0.0.0.0.0.0.Ep.0.0-Ea.Ea.0.0.0.0.0.0.0.Ea.Ea-Ep.0.0.0.0.0.0.0.0.Ep-0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1D2O_A
shapeImage
Protein Id: 1D2O_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1D2O_A
shapeImage
Protein Id: 1D2O_A

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 EEE Ea.Ea-0 True 3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B, d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3 EEE Ea.Ea-Ep True 2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A, d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3 EEE Ea.0-0 True 2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A, d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3 EEE 0.Ea-0 True 2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A, d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3 EEE Ea.0-Ep False d2jdih2,
4 EEEE Ea.Ea.Ea-0.Ep-Ea True 3TBN:A, 4BV4:L, 4LXR:K, 5AOQ:L, 5AOQ:M, d1jmab2, 1ccvA00, 1ccvA00,
4 EEEE Ea.0.Ea-0.0-0 True 3BG4:D, 3UA0:A, 3UCI:A, 4R5R:A, 4R5R:B, 4ZRP:C, 4ZRP:D, 5B4Y:B, 5C13:A, 5C13:G, 5F0E:B, 5F86:B, 5JQP:B, 5KXH:B, 5KY0:B, 5KY4:B, 1J2L:A, 1KIG:L, 1LSL:A, 2QSK:A, 2W2N:E, d1ataa_, d1b9wa2, d1i07a_, d1j2la_, d1jmab1, d1ppqa_, d1q4ga2, d2i9aa1, d2j01y1, d2qqra2, 1eqgA01, 1fycA00, 1i07A00, 1xkbA01, 2fd6A01,
4 EEEE 0.Ea.0-0.0-Ea False d1jhna3, d1nlta3, 1y8eB04,
4 EEEE 0.Ea.Ea-0.Ep-0 True 3R45:C, 3UL5:A, 3UL5:B, 3UL5:D, 4TX4:A, 4TX4:B,
4 EEEE Ea.Ea.0-Ep.Ep-Ea False 1ny4A00,
4 EEEE Ea.0.Ea-Ep.0-0 False d1exta1, d2heyr3,
4 EEEE Ea.Ea.Ea-Ep.Ep-Ea True 4AY9:B, 4AY9:E, 4AY9:H, 4YU8:A, 1EJA:B, 1HCN:B, d1hcnb_, d1ne3a_, d1xwdb1, 1hcnB00, 1xwdB00,
5 EEEEE Ea.Ea.0.Ea-Ep.0.0-0.0-0 False 3CAM:A, 3CAM:B, d1o12a1, 1o12A01,
5 EEEEE Ea.0.Ea.0-0.0.0-0.Ea-0 True 3NFG:D, 3NFG:F, 3NFG:J, 3NFG:N, 1RK8:C, d1rk8c_,
5 EEEEE 0.Ea.Ea.0-0.Ep.Ep-0.Ea-0 False d1vq8a2,
6 EEEEEE 0.Ea.0.Ea.Ea-0.0.0.Ep-Ea.0.0-0.0-0 True 4QQG:A, 4QQG:C, 4QQG:D, 4QQG:E, 4QQG:G,
9 EEEEEEEEE Ea.Ea.Ea.0.Ea.0.Ea.Ea-0.Ep.0.0.0.0.Ep-Ea.0.0.Ea.0.0-0.0.0.0.0-0.Ea.0.Ea-Ep.0.0-Ea.Ea-Ep False d1d2oa1,
9 EEEEEEEEE Ea.Ea.Ea.0.Ea.0.Ea.Ea-Ep.Ep.0.0.0.0.Ep-Ea.0.0.Ea.0.0-0.0.0.0.0-0.Ea.0.0-Ep.0.0-Ea.Ea-Ep False d1d2pa4,
Protein In ProLegoDB with identical/similar Topology