Protein Detail

Protein Information

PDBId & Chain	3T24 : B
Molecule	Probable porin
Residues	368
Sequence
SSE Sequence^*(18)	`EEEEEEEEEEEEEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea-0.Ep.Ep.Ep.Ep.Ep.0.0.0.0.0.0.0.0.0.0-0.0.0.Ea.0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-Ea`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3T24_B

Protein Id: 3T24_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3T24_B

Protein Id: 3T24_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
4	EEEE	Ea.Ea.Ea-0.Ep-0	True	3KVP:F, 4BV4:M, 4LXR:J, 4QQG:B, 4QQG:F, 2A28:A,	d1b9wa1, d1exta2, d1k4us_, d1kloa2, d1qypa_, d1wfwa_, d2heyr1, 1qypA00,
4	EEEE	Ea.Ea.Ea-Ep.Ep-0	False	3KVP:A, 3KVP:B, 3KVP:E, 1R8O:B,
4	EEEE	Ea.Ea.Ea-Ep.Ep-Ea	True	4AY9:B, 4AY9:E, 4AY9:H, 4YU8:A, 1EJA:B, 1HCN:B,	d1hcnb_, d1ne3a_, d1xwdb1, 1hcnB00, 1xwdB00,
4	EEEE	Ea.Ea.Ea-0.0-0	True	4A94:D, 5JB9:E, 1XDT:R,	d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,
5	EEEEE	Ea.Ea.Ea.Ea-0.0.0-0.0-0	False	5E8D:A,	d1k28a2, d1moxc_, d1r7aa1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XQY	J	211		View
2XY1	A	192	Neural cell adhesion molecule 2	View
2XY2	A	189	Neural cell adhesion molecule 2	View
3BQU	B	214	Hepatitis B virus receptor binding protein	View
3ERB	A	188	Complement C2	View
3G9H	A	262	Suppressor of yeast profilin deletion	View
3GRW	A	206	Fibroblast growth factor receptor 3	View
3LPW	A	197	Titin	View
3LPW	B	195	Titin	View
3OZ9	H	213	Ig gamma-2A chain C region, A allele	View
3QZ4	A	302	Endo-1,4-beta-xylanase D	View
3QZ4	B	302	Endo-1,4-beta-xylanase D	View
3S97	C	197	Contactin-1	View
3S97	D	197	Contactin-1	View
3USU	D	242	Lectin Alpha chain	View
3V8O	A	193	Filamin-C	View
3WIH	I	219		View
3WYR	B	189	Killer cell immunoglobulin-like receptor 2DL4	View
3X3F	H	222		View
4CNL	A	182	PUTATIVE PNEUMOCOCCAL SURFACE PROTEIN	View
4DJM	C	199	Periplasmic chaperone	View
4DJM	E	198	Periplasmic chaperone	View
4DJM	F	202	Periplasmic chaperone	View
4DJM	H	201	Periplasmic chaperone	View
4F2M	A	214		View
4F2M	C	220		View
4FMK	A	221	Nectin-2	View
4G7V	H	215		View
4HH8	A	206	Butyrophilin subfamily 1 member A1	View
4IFD	I	230	Exosome complex component CSL4	View
4IQZ	A	175	DNA-directed RNA polymerase subunit beta'	View
4IQZ	B	173	DNA-directed RNA polymerase subunit beta'	View
4IQZ	C	173	DNA-directed RNA polymerase subunit beta'	View
4IQZ	E	172	DNA-directed RNA polymerase subunit beta'	View
4KKR	B	234	RbmA protein	View
4LLA	A	198	Leukocyte immunoglobulin-like receptor subfamily B member 2	View
4LLA	B	198	Leukocyte immunoglobulin-like receptor subfamily B member 2	View
4M1G	H	216		View
4PB0	H	206	Igh protein	View
4PCG	A	267	VP1	View
4PCG	C	266	VP1	View
4PCG	D	263	VP1	View
4PCG	E	264	VP1	View
4WEB	H	216		View
4XP9	H	219		View
4Y25	A	290	Poly-beta-1,6-N-acetyl-D-glucosamine export protein	View
5A16	E	226	Fab4201 heavy chain	View
5A16	G	226	Fab4201 heavy chain	View
5A9D	A	189	Solute carrier family 15 member 1	View
5A9D	B	189	Solute carrier family 15 member 1	View
5B22	A	209	Nectin-3	View
5BV7	C	220		View
5C33	B	177	Ryanodine receptor 2	View
5D70	H	208		View
5DTF	A	201	Ig gamma chain C region	View
5DTF	H	201	Ig gamma chain C region	View
5EN2	A	208		View
5FQ8	G	212	Uncharacterized protein	View
5K9Q	G	231		View
5K9Q	H	228		View
5K9Q	J	231		View
5K9Q	S	231		View
5K9Q	U	231		View
5KVG	H	214		View
5LY8	A	230	Tail component	View
5TLK	F	211		View
5UGY	H	221		View
5UGY	J	221		View
5UK5	A	194	Neurogenic locus notch homolog protein 1	View
1C5D	B	215	Ig gamma-2B chain C region	View
1D2O	A	187	Collagen adhesin	View
1DHK	B	195	Alpha-amylase inhibitor 1	View
1DQQ	B	210	Ig gamma-2A chain C region, A allele	View
1EMT	H	208	Ig gamma-1 chain C region secreted form	View
1FJ1	B	213	Ig gamma-2B chain C region	View
1FLR	H	216	Ig gamma-2A chain C region, membrane-bound form	View
1FRG	H	220	Ig gamma-2A chain C region secreted form	View
1FX5	A	240	Anti-H(O) lectin 1	View
1HEZ	B	207	Ig mu chain C region	View
1KCU	H	217	Ig gamma-1 chain C region, membrane-bound form	View
1MCP	H	222	Ig heavy chain V region M603	View
1MVQ	A	236	Mannose/glucose-specific lectin Cramoll	View
1OSP	H	218	Ig gamma-2B chain C region	View
1PG7	X	213	Ig gamma-2A chain C region, A allele	View
1QFH	A	212		View
1QKZ	H	213		View
1SQ4	A	258	Uncharacterized protein	View
1ZTX	H	213		View
1ZXQ	A	192	Intercellular adhesion molecule 2	View
2A77	H	219		View
2ADF	H	218	Ig heavy chain Mem5	View
2DDQ	H	211	Anti-myosin immunoglobulin heavy chain variable region	View
2IB5	A	218	Cj-Blue	View
2OK0	H	211	Mc5 VHCH1	View
2PET	A	231	Basal cell adhesion molecule	View
2V5T	A	184	Neural cell adhesion molecule 2	View
3SGE	H	217		View
4KI5	C	218		View
4NCC	2	220		View
5D7S	H	218		View

Topology view of query protein [ProLego results]

3T24 : B

Topology Information