ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain4Y25 : A
MoleculePoly-beta-1,6-N-acetyl-D-glucosamine export protein
Residues290
Sequence
SSE Sequence*(18) EEEEEEEEEEEEEEEEEE
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.Ea.0.Ea.0.Ea.Ea.Ea.Ea-0.Ep.Ep.0.0.Ep.0.0.0.Ea.0.0.Ea.Ep.Ep.Ep-0.0.0.0.0.0.0.0.0.0.Ea.0.Ep.0.0-0.0.0.0.0.0.0.0.0.0.0.0.Ea.0-0.0.0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.Ep-Ea

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4Y25_A
shapeImage
Protein Id: 4Y25_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4Y25_A
shapeImage
Protein Id: 4Y25_A

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 EEE Ea.Ea-0 True 3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B, d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3 EEE Ea.Ea-Ep True 2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A, d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3 EEE Ea.0-Ea False 4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B, d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
3 EEE 0.Ea-0 True 2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A, d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3 EEE Ea.0-0 True 2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A, d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3 EEE 0.Ea-Ea False 3QTE:A, 3QTE:B, 3QTE:C, 5J4S:B, 2J5L:A, d1bdsa_, d1ut3a_, d2j4wd1, d2nn6i2, 1bdsA00, 1bdsA00,
4 EEEE Ea.Ea.Ea-0.Ep-0 True 3KVP:F, 4BV4:M, 4LXR:J, 4QQG:B, 4QQG:F, 2A28:A, d1b9wa1, d1exta2, d1k4us_, d1kloa2, d1qypa_, d1wfwa_, d2heyr1, 1qypA00,
4 EEEE Ea.Ea.Ea-Ep.Ep-0 False 3KVP:A, 3KVP:B, 3KVP:E, 1R8O:B,
4 EEEE Ea.Ea.Ea-0.0-0 True 4A94:D, 5JB9:E, 1XDT:R, d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,
4 EEEE Ea.0.Ea-Ea.0-0 False d1h8pa1, d1pjua2,
4 EEEE 0.Ea.0-0.0-Ea False d1jhna3, d1nlta3, 1y8eB04,
4 EEEE Ea.0.Ea-0.Ea-0 False
5 EEEEE Ea.Ea.Ea.Ea-0.Ep.0-0.0-0 False d1dqca_, 1dqcA00,
5 EEEEE Ea.Ea.Ea.Ea-0.0.0-0.0-0 False 5E8D:A, d1k28a2, d1moxc_, d1r7aa1,
Protein In ProLegoDB with identical/similar Topology