Protein Detail

Protein Information

Domain Id	d1jmab1
DB_Source-Class	ASTRAL-1.75B, g.24.1.1
Molecule	u'Tumor necrosis factor receptor superfamily member 14'
Residues	56
Sequence
SSE Sequence^*(4)	`EEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.Ea-0.0-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d1jmab1

Protein Id: d1jmab1

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d1jmab1

Protein Id: d1jmab1

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3BG4	D	46	Guamerin	View
3UA0	A	76	Fibroin heavy chain	View
3UCI	A	72	Zinc metalloproteinase/disintegrin	View
4R5R	A	68	Zinc metalloproteinase/disintegrin	View
4R5R	B	68	Zinc metalloproteinase/disintegrin	View
4ZRP	C	78	CD320 antigen	View
4ZRP	D	79	CD320 antigen	View
5B4Y	B	79	Low-density lipoprotein receptor-related protein 8	View
5C13	A	59	Transcription initiation factor TFIID subunit 3	View
5C13	G	59	Transcription initiation factor TFIID subunit 3	View
5F0E	B	88	Glucosidase 2 subunit beta	View
5F86	B	39	Coagulation factor IX	View
5JQP	B	131	Glucosidase 2 subunit beta-like protein	View
5KXH	B	38	Coagulation factor VII	View
5KY0	B	38	Neurogenic locus notch homolog protein 1	View
5KY4	B	36	Neurogenic locus notch homolog protein 1	View
1J2L	A	68	Disintegrin triflavin	View
1KIG	L	51	Coagulation factor X	View
1LSL	A	113	Thrombospondin-1	View
2QSK	A	95	Scytovirin	View
2W2N	E	49	Low-density lipoprotein receptor	View
d1ataa_	--	62	u'Trypsin inhibitor'	View
d1b9wa2	--	44	u'Merozoite surface protein 1'	View
d1i07a_	--	59	u'Epidermal growth factor receptor kinase substrate 8'	View
d1j2la_	--	68	u'Disintegrin triflavin'	View
d1ppqa_	--	68	u'Complement receptor type 1'	View
d1q4ga2	--	42	u'Prostaglandin G/H synthase 1'	View
d2i9aa1	--	40	u'Urokinase-type plasminogen activator'	View
d2j01y1	--	101		View
d2qqra2	--	55	u'Lysine-specific demethylase 4A'	View
1eqgA01	--	41	Prostaglandin G/H synthase 1	View
1fycA00	--	106	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	View
1i07A00	--	59	Epidermal growth factor receptor kinase substrate 8	View
1xkbA01	--	38	Coagulation factor X	View
2fd6A01	--	39	Urokinase-type plasminogen activator	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2Y5P	A	72	Internalin B	View
2Y5P	B	72	Internalin B	View
2Y5P	C	73	Internalin B	View
2ZJR	4	37	50S ribosomal protein L36	View
2ZJR	R	110	50S ribosomal protein L24	View
3A5Z	F	59	Elongation factor P	View
3BDU	A	51	Putative lipoprotein	View
3BDU	B	50	Putative lipoprotein	View
3BDU	C	50	Putative lipoprotein	View
3BDU	D	50	Putative lipoprotein	View
3BDU	E	51	Putative lipoprotein	View
3BDU	F	50	Putative lipoprotein	View
3BDU	G	50	Putative lipoprotein	View
3BG4	D	46	Guamerin	View
3KCG	L	54	Coagulation factor IX	View
3KVP	A	42	Uncharacterized protein YmzC	View
3KVP	B	42	Uncharacterized protein YmzC	View
3KVP	E	42	Uncharacterized protein YmzC	View
3KVP	F	41	Uncharacterized protein YmzC	View
3TBN	A	87	Putative uncharacterized protein	View
3UA0	A	76	Fibroin heavy chain	View
3UCI	A	72	Zinc metalloproteinase/disintegrin	View
4A94	D	51	Metallocarboxypeptidase inhibitor	View
4AY9	B	107	Follitropin subunit beta	View
4AY9	E	107	Follitropin subunit beta	View
4AY9	H	107	Follitropin subunit beta	View
4BV4	L	66	Protein spaetzle	View
4BV4	M	68	Protein spaetzle	View
4LE9	A	59	Proto-oncogene tyrosine-protein kinase Src	View
4LXR	J	64	Protein spaetzle	View
4LXR	K	66	Protein spaetzle	View
4OZC	A	50	Immunoglobulin G-binding protein G	View
4OZK	A	49	Putative bacteriocin	View
4QQ6	A	58	Survival motor neuron protein	View
4QQG	B	67	Histone acetyltransferase KAT5	View
4QQG	F	70	Histone acetyltransferase KAT5	View
4R5R	A	68	Zinc metalloproteinase/disintegrin	View
4R5R	B	68	Zinc metalloproteinase/disintegrin	View
4X0N	B	44	Helianthamide	View
4X9Z	A	49	Conotoxin GeXXA	View
4X9Z	B	46	Conotoxin GeXXA	View
4YU8	A	72	Neuroblastoma suppressor of tumorigenicity 1	View
4YX7	A	65	Surface presentation of antigens protein SpaO	View
4YX7	D	65	Surface presentation of antigens protein SpaO	View
4ZRP	C	78	CD320 antigen	View
4ZRP	D	79	CD320 antigen	View
5AOQ	L	86	Prothoracicotropic hormone	View
5AOQ	M	88	Prothoracicotropic hormone	View
5B4Y	B	79	Low-density lipoprotein receptor-related protein 8	View
5C13	A	59	Transcription initiation factor TFIID subunit 3	View
5C13	C	59	Transcription initiation factor TFIID subunit 3	View
5C13	E	59	Transcription initiation factor TFIID subunit 3	View
5C13	G	59	Transcription initiation factor TFIID subunit 3	View
5DM6	1	54	50S ribosomal protein L33	View
5F0E	B	88	Glucosidase 2 subunit beta	View
5F86	B	39	Coagulation factor IX	View
5HCC	D	47	Dermacentor andersoni RaCI3	View
5HCD	D	49	Rhipicephalus microplus RaCI2	View
5JB9	E	51	Coagulation factor IX	View
5JQP	B	131	Glucosidase 2 subunit beta-like protein	View
5KXH	B	38	Coagulation factor VII	View
5KY0	B	38	Neurogenic locus notch homolog protein 1	View
5KY4	B	36	Neurogenic locus notch homolog protein 1	View
1EJA	B	53	Bdellastasin	View
1HCN	B	110	Choriogonadotropin subunit beta 3	View
1I71	A	83	Apolipoprotein(a)	View
1J2L	A	68	Disintegrin triflavin	View
1KIG	L	51	Coagulation factor X	View
1KRN	A	79	Plasminogen	View
1LSL	A	113	Thrombospondin-1	View
1R8O	B	71	Kunitz trypsin inhibitor	View
1XDT	R	41	Proheparin-binding EGF-like growth factor	View
2A28	A	54	Protein BZZ1	View
2QSK	A	95	Scytovirin	View
2RD1	A	55	Putative outer membrane lipoprotein	View
2W2N	E	49	Low-density lipoprotein receptor	View

Topology view of query protein [ProLego results]

d1jmab1

Topology Information