Protein Detail

Protein Information

PDBId & Chain	4LDT : C
Molecule	Ubiquitin-conjugating enzyme E2 D2
Residues	148
Sequence
SSE Sequence^*(8)	`HEEEEHHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ea.Ea.Ea.Cp.0.Hr-Cp.0.0.Ca.0.0-0.0.Cp.0.0-0.Ca.0.0-Hr.0.0-0.0-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4LDT_C

Protein Id: 4LDT_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4LDT_C

Protein Id: 4LDT_C

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Cp-Ca	False	4MIT:E, 4MIT:F, 4MIT:G, 4MIT:H, 1BRB:I,	d1iyma_, 1iymA00,
3	HHH	0.Hr-0	False	3V9R:B, 3VIQ:B, 4F9K:A, 4GHJ:B, 4HDD:A, 4TSH:A, 4Z8E:A, 4Z8E:B, 4Z8E:C, 5LUT:C, 5LUT:E, 1NGM:B, 4YC5:A, 4ZN8:A, 5VC9:C, 5X42:B,	d1kbha_, d1p94a_, 1kbhA00, 1ngmB00, 1ngmJ00, 1p94A00,
4	HEEE	Ca.Ea.Ea-Cp.0-0	False	3LYV:E, 3LYV:F,	d1o6wa2,
4	EEEE	Ea.Ea.Ea-0.0-0	True	4A94:D, 5JB9:E, 1XDT:R,	d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,
5	EEEHH	Ea.Ea.Cp.0-0.Ca.0-Cp.0-0	False		d1qnta2,
6	HEEEEH	Ca.Ea.Ea.Ea.Cp-Cp.0.0.Ca-0.0.Cp-0.Ca-Hr	False	2FO3:A,	d2fo3a1,
7	HEEEEHH	Ca.Ea.Ea.Ea.Cp.0-Cp.0.0.Ca.0-0.0.Cp.0-0.Ca.0-Hr.0-0	False	3WE5:A, 3WE5:B,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YHO	B	149	Ubiquitin-conjugating enzyme E2 D1	View
2YHO	D	149	Ubiquitin-conjugating enzyme E2 D1	View
2YHO	F	149	Ubiquitin-conjugating enzyme E2 D1	View
2YHO	H	147	Ubiquitin-conjugating enzyme E2 D1	View
3BZH	A	161	Ubiquitin-conjugating enzyme E2 E1	View
3ZNI	C	146	Ubiquitin-conjugating enzyme E2 D2	View
3ZNI	G	146	Ubiquitin-conjugating enzyme E2 D2	View
3ZNI	K	146	Ubiquitin-conjugating enzyme E2 D2	View
3ZNI	O	146	Ubiquitin-conjugating enzyme E2 D2	View
4AUQ	A	146	Ubiquitin-conjugating enzyme E2 D2	View
4AUQ	D	146	Ubiquitin-conjugating enzyme E2 D2	View
4CCG	A	157	Ubiquitin-conjugating enzyme E2 T	View
4CCG	B	147	Ubiquitin-conjugating enzyme E2 T	View
4DHI	D	150	Ubiquitin-conjugating enzyme E2 N	View
4GPR	A	150	Ubiquitin-conjugating enzyme family protein	View
4II2	C	149	Ubiquitin-conjugating enzyme E2 4	View
4M1N	B	159	SUMO-conjugating enzyme	View
4M1N	C	160	SUMO-conjugating enzyme	View
4ONM	B	149	Ubiquitin-conjugating enzyme E2 N	View
4S3O	A	148	Ubiquitin-conjugating enzyme E2 D3	View
4S3O	D	148	Ubiquitin-conjugating enzyme E2 D3	View
4V3L	A	146	Ubiquitin-conjugating enzyme E2 D2	View
4X57	A	148	Ubiquitin-conjugating enzyme E2 8	View
4X57	C	149	Ubiquitin-conjugating enzyme E2 8	View
5D0M	A	147	Ubiquitin-conjugating enzyme E2 D2	View
5D1M	A	146	Ubiquitin-conjugating enzyme E2 D2	View
5FER	B	145	Ubiquitin-conjugating enzyme E2 D1	View
5FER	E	146	Ubiquitin-conjugating enzyme E2 D1	View
5IFR	A	151	Ubiquitin-conjugating enzyme E2 D3	View
1Z2U	A	150	Ubiquitin-conjugating enzyme E2 2	View
2F4Z	A	145		View
d1z2ua1	--	147	u'Ubiquitin-conjugating enzyme E2 2'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4TKP	A	145	Ubiquitin-conjugating enzyme E2 N	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XWU	A	158	SUMO-conjugating enzyme UBC9	View
2YB6	A	150	Ubiquitin-conjugating enzyme E2 B	View
2ZET	C	141	Melanophilin	View
3E95	A	147	Ubiquitin conjugating enzyme, putative	View
3E95	C	138	Ubiquitin conjugating enzyme E2, putative	View
3FN1	B	160	NEDD8-conjugating enzyme UBE2F	View
3H8K	A	164	Ubiquitin-conjugating enzyme E2 G2	View
3RCZ	B	155	SUMO-conjugating enzyme ubc9	View
3RZ3	A	164	Ubiquitin-conjugating enzyme E2 R1	View
3RZ3	B	164	Ubiquitin-conjugating enzyme E2 R1	View
3RZ3	C	156	Ubiquitin-conjugating enzyme E2 R1	View
3RZ3	D	146	Ubiquitin-conjugating enzyme E2 R1	View
4DZO	B	119	Mitotic spindle assembly checkpoint protein MAD1	View
4JQU	A	163	Ubiquitin-conjugating enzyme E2 7	View
4M1N	A	158	SUMO-conjugating enzyme	View
4Q5E	C	155	Ubiquitin-conjugating enzyme E2 L3	View
4QPL	B	149	Ubiquitin-conjugating enzyme E2 D1	View
4QPL	D	153	Ubiquitin-conjugating enzyme E2 D1	View
4R62	A	149	Ubiquitin-conjugating enzyme E2 2	View
4Y1L	A	158	SUMO-conjugating enzyme UBC9	View
4Y1L	B	157	SUMO-conjugating enzyme UBC9	View
4Y1L	C	109	RWD domain-containing protein 3	View
4YII	U	145	Ubiquitin-conjugating enzyme E2 C	View
5F6E	A	156	SUMO-conjugating enzyme UBC9	View
5FQ2	A	156	SUMO-conjugating enzyme UBC9	View
5HPT	C	151	Ubiquitin-conjugating enzyme E2 L3	View
5HPT	F	150	Ubiquitin-conjugating enzyme E2 L3	View
5KNL	C	171	Ubiquitin-conjugating enzyme E2 15	View
5KNL	F	162	Ubiquitin-conjugating enzyme E2 15	View
5TUU	A	144	Transcription factor Dp-1	View
1JAT	B	132	Ubiquitin-conjugating enzyme variant MMS2	View
1PZV	A	152	Probable ubiquitin-conjugating enzyme E2 7	View
1QCQ	A	148	Ubiquitin-conjugating enzyme E2 4	View
1Z3D	A	151	Ubiquitin-conjugating enzyme E2 1	View
2AAK	A	150	Ubiquitin-conjugating enzyme E2 1	View
2E2C	A	156	Ubiquitin-conjugating enzyme E2 C	View
2GJD	A	155	SUMO-conjugating enzyme UBC9	View
2R0J	A	147	Ubiquitin conjugating enzyme, putative	View
5ULF	A	151	Ubiquitin-conjugating enzyme E2 D2	View

Topology view of query protein [ProLego results]

4LDT : C

Topology Information