Protein Detail

Protein Information

PDBId & Chain	3V4D : D
Molecule	Putative aminoacrylate peracid reductase RutC
Residues	128
Sequence
SSE Sequence^*(8)	`EEEHEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ea.Ca.0.Ca.Ca.0-0.Cp.0.Hp.Ep.Cp-Ca.0.0.0.Ea-0.0.0.Cp-0.0.Ea-0.0-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3V4D_D

Protein Id: 3V4D_D

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3V4D_D

Protein Id: 3V4D_D

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
4	EEEH	Ea.Ea.Ca-0.Cp-Ca	True	2YZT:A, 3BID:D, 3BID:H, 3FPU:B, 3TN2:A, 4MHE:C, 4MHE:D, 4OIJ:A, 4OIJ:B, 4WPY:A, 4XT1:B, 4ZLT:F, 5COY:A, 5COY:B, 5EKI:A, 5EKI:B, 5EKI:C, 5EKI:D, 5EKI:E, 5EKI:F, 1DOK:A, 1F2L:A, 2FGG:A, 2FHT:A, 2Q8R:E, 2RA4:A,	d1b3aa_, d1f2la_, d1g2sa_, d1j8ia_, d1o80a_, d1wiia_, d2fgga1, d2q8re_, d2ra4a_, 1b3aA00, 1b69A00, 1b3aA00, 1b69A00, 1eigA00, 1f2lA00, 1icwB00, 1j8iA00, 2fhtA00,
4	EEHE	Ea.Ca.0-Cp.0-0	True	4WXA:D, 4WXA:E, 5B3H:F, 4LAD:B,	d2ewla1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3KJJ	I	113	Uncharacterized protein	View
3L7Q	F	124	Putative translation initiation inhibitor aldR regulator-like protein	View
3V4D	B	123	Putative aminoacrylate peracid reductase RutC	View
3V4D	C	124	Putative aminoacrylate peracid reductase RutC	View
3V4D	E	123	Putative aminoacrylate peracid reductase RutC	View
3V4D	F	131	Putative aminoacrylate peracid reductase RutC	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3GTZ	A	115	Putative translation initiation inhibitor	View
3GTZ	B	115	Putative translation initiation inhibitor	View
3GTZ	C	115	Putative translation initiation inhibitor	View
3I3F	A	131	Uncharacterized protein	View
3I3F	B	128	Uncharacterized protein	View
3I3F	C	128	Uncharacterized protein	View
3K0T	A	119	Endoribonuclease L-PSP, putative	View
3K0T	B	119	Endoribonuclease L-PSP, putative	View
3K0T	C	120	Endoribonuclease L-PSP, putative	View
3K12	E	113	Uncharacterized protein	View
3KJJ	A	113	Uncharacterized protein	View
3KJJ	B	115	Uncharacterized protein	View
3KJJ	C	115	Uncharacterized protein	View
3KJJ	D	114	Uncharacterized protein	View
3KJJ	E	112	Uncharacterized protein	View
3KJJ	F	113	Uncharacterized protein	View
3KJJ	G	111	Uncharacterized protein	View
3KJJ	H	112	Uncharacterized protein	View
3KJJ	J	115	Uncharacterized protein	View
3KJJ	K	115	Uncharacterized protein	View
3KJJ	L	111	Uncharacterized protein	View
3L7Q	A	124	Putative translation initiation inhibitor aldR regulator-like protein	View
3L7Q	B	124	Putative translation initiation inhibitor aldR regulator-like protein	View
3L7Q	C	124	Putative translation initiation inhibitor aldR regulator-like protein	View
3L7Q	D	124	Putative translation initiation inhibitor aldR regulator-like protein	View
3L7Q	G	124	Putative translation initiation inhibitor aldR regulator-like protein	View
3L7Q	H	124	Putative translation initiation inhibitor aldR regulator-like protein	View
3LME	A	129	Possible translation initiation inhibitor	View
3LME	B	129	Possible translation initiation inhibitor	View
3LME	C	127	Possible translation initiation inhibitor	View
3LME	D	129	Possible translation initiation inhibitor	View
3LME	E	129	Possible translation initiation inhibitor	View
3LME	F	127	Possible translation initiation inhibitor	View
3LME	G	129	Possible translation initiation inhibitor	View
3LME	H	129	Possible translation initiation inhibitor	View
3LME	I	128	Possible translation initiation inhibitor	View
3LME	J	129	Possible translation initiation inhibitor	View
3LME	K	129	Possible translation initiation inhibitor	View
3LME	L	128	Possible translation initiation inhibitor	View
3QUW	A	125	Protein MMF1, mitochondrial	View
3R0P	A	125	L-PSP putative endoribonuclease	View
3R0P	B	125	L-PSP putative endoribonuclease	View
3R0P	D	126	L-PSP putative endoribonuclease	View
3R0P	F	126	L-PSP putative endoribonuclease	View
3UQI	A	108	Peptidyl-prolyl cis-trans isomerase	View
3V4D	A	119	Putative aminoacrylate peracid reductase RutC	View
3VCZ	A	127	Endoribonuclease L-PSP	View
3VCZ	B	127	Endoribonuclease L-PSP	View
3VCZ	C	127	Endoribonuclease L-PSP	View
4DIP	A	121	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	B	121	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	C	120	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	D	120	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	E	120	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	F	120	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	G	120	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	H	119	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	I	121	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4DIP	J	119	Peptidyl-prolyl cis-trans isomerase FKBP14	View
4NBI	A	163	D-tyrosyl-tRNA(Tyr) deacylase	View
4NBI	B	151	D-tyrosyl-tRNA(Tyr) deacylase	View
4XTB	A	109	Calcium uniporter protein, mitochondrial	View
5V4D	A	127	Putative translational inhibitor protein	View
5V4D	B	126	Putative translational inhibitor protein	View
5V4D	C	126	Putative translational inhibitor protein	View
5V4D	D	127	Putative translational inhibitor protein	View
5V4D	E	127	Putative translational inhibitor protein	View
5V4D	F	126	Putative translational inhibitor protein	View
1JD1	A	126	Protein HMF1	View
1NQ3	A	133	Ribonuclease UK114	View
1ONI	A	136	Ribonuclease UK114	View
1PF5	A	130	RutC family protein YjgH	View
1QAH	A	132	Ribonuclease UK114	View
1QD9	A	124	2-iminobutanoate/2-iminopropanoate deaminase	View
1QU9	A	126	2-iminobutanoate/2-iminopropanoate deaminase	View
1XRG	A	124	Endoribonuclease L-PSP	View
2B33	A	127	Protein synthesis inhibitor, putative	View
2DBO	A	148	D-aminoacyl-tRNA deacylase	View
2DYY	A	125	RutC family protein PH0854	View
2PPN	A	107	Peptidyl-prolyl cis-trans isomerase FKBP1A	View
2UYK	A	126	Putative reactive intermediate deaminase TdcF	View

Topology view of query protein [ProLego results]

3V4D : D

Topology Information