Protein Detail

Protein Information

PDBId & Chain	3KPB : B
Molecule	Uncharacterized protein MJ0100
Residues	119
Sequence
SSE Sequence^*(10)	`EHEEHEHEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ca.Ea.Cp.0.Ca.Ca.Ea.Cp-Ep.Cp.0.0.0.Ep.Cp.0-0.Ha.0.0.0.0.Ha-0.0.0.Ea.0.0-0.0.0.Ep.0-0.0.Ea.0-0.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3KPB_B

Protein Id: 3KPB_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3KPB_B

Protein Id: 3KPB_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEH	Ea.Cp-0	False	5T59:C, 5T59:F, 5TDR:A, 2DS5:A,	d2ds5a_,
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
4	EEHE	Ea.Cp.0-0.0-0	False	4CMZ:C,
9	HEEHEHEEH	Ca.Ea.Cp.0.Ca.Ca.Ea.Cp-Cp.0.0.0.Ep.Cp.0-Ha.0.0.0.0.Ha-0.0.Ea.0.0-0.0.Ep.0-0.Ea.0-0.0-0	False	3KPB:D, 4UUU:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YZI	A	125	Putative uncharacterized protein PH0107	View
2YZI	B	129	Putative uncharacterized protein PH0107	View
3I8N	A	118	Uncharacterized protein	View
3I8N	B	120	Uncharacterized protein	View
3JTF	B	121	Magnesium and cobalt efflux protein	View
3KAP	A	147	Flavodoxin	View
3LV9	A	128	Putative membrane protein	View
4H2D	A	158	NADPH-dependent diflavin oxidoreductase 1	View
4H2D	B	153	NADPH-dependent diflavin oxidoreductase 1	View
4KYU	A	152	GTPase Der	View
4KYU	B	143	GTPase Der	View
4O9K	B	122	Arabinose 5-phosphate isomerase	View
5IIP	A	116	Glycine/betaine ABC transporter ATP-binding protein	View
5LJL	A	147	Flavodoxin	View
1PBJ	A	116	Uncharacterized protein	View
2A67	A	163	Isochorismatase family protein	View
2DYK	A	150	GTPase Der	View
2EF7	A	121	CBS domain protein	View
2EMQ	A	135	Hypothetical conserved protein	View
2P9M	A	124	Uncharacterized protein MJ0922	View
2WNY	A	137	Conserved protein	View
5X4B	A	152	GTPase Der	View

Topology view of query protein [ProLego results]

3KPB : B

Topology Information