ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1cq3A00 2.60.240.10 224 see topology VCCI or CPXV227 protein Cowpox virus
CATH 3.5 1cqmA00 3.30.70.60 98 see topology 30S ribosomal protein S6 Thermus thermophilus
CATH 3.5 1cqxA02 2.40.30.10 111 see topology Flavohemoprotein Cupriavidus necator
CATH 3.5 1cqxA03 3.40.50.80 142 see topology Flavohemoprotein Cupriavidus necator
CATH 3.5 1cr2A00 3.40.50.300 239 see topology DNA primase/helicase Escherichia virus T7
CATH 3.5 1cruA00 2.120.10.30 448 see topology Quinoprotein glucose dehydrogenase B Acinetobacter calcoaceticus
CATH 3.5 1cs3A00 3.30.710.10 116 see topology Zinc finger and BTB domain-containing protein 16 Homo sapiens
CATH 3.5 1cseI00 3.30.10.10 63 see topology Eglin C Hirudo medicinalis
CATH 3.5 1ct5A00 3.20.20.10 225 see topology UPF0001 protein YBL036C Saccharomyces cerevisiae
CATH 3.5 1ct9A01 3.60.20.10 192 see topology Asparagine synthetase B [glutamine-hydrolyzing] Escherichia coli
CATH 3.5 1ctfA00 3.30.1390.10 68 see topology 50S ribosomal protein L7/L12 Escherichia coli
CATH 3.5 1ctjA00 1.10.760.10 89 see topology Cytochrome c6 Chlorolobion braunii
CATH 3.5 1cukA03 1.10.8.10 48 see topology Holliday junction ATP-dependent DNA helicase RuvA Escherichia coli
CATH 3.5 1cwvA04 2.60.40.1080 91 see topology Invasin Yersinia pseudotuberculosis
CATH 3.5 1cwvA05 3.10.100.10 100 see topology Invasin Yersinia pseudotuberculosis
CATH 3.5 1cx1A00 2.60.120.260 153 see topology Endoglucanase C Cellulomonas fimi
CATH 3.5 1cxcA00 1.10.760.10 124 see topology Cytochrome c2 Rhodobacter sphaeroides
CATH 3.5 1cxqA00 3.30.420.10 143 see topology Gag-Pro-Pol polyprotein Avian sarcoma virus
CATH 3.5 1cxyA00 3.10.120.10 81 see topology Soluble cytochrome b558 Ectothiorhodospira shaposhnikovii
CATH 3.5 1cxzB00 1.10.287.160 86 see topology Serine/threonine-protein kinase N1 Homo sapiens
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins