ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1cy5A00 1.10.533.10 93 see topology Apoptotic protease-activating factor 1 Homo sapiens
CATH 3.5 1cydA00 3.40.50.720 242 see topology Carbonyl reductase [NADPH] 2 Mus musculus
CATH 3.5 1cyoA00 3.10.120.10 88 see topology Cytochrome b5 Bos taurus
CATH 3.5 1cyxA00 2.60.40.420 158 see topology Cytochrome bo(3) ubiquinol oxidase subunit 2 Escherichia coli
CATH 3.5 1cz3B00 3.40.430.10 168 see topology Dihydrofolate reductase Thermotoga maritima
CATH 3.5 1czjA00 3.90.10.10 110 see topology Cytochrome c3, 26 kDa Desulfomicrobium norvegicum
CATH 3.5 1d02B00 3.40.580.10 200 see topology Type-2 restriction enzyme MunI Mycoplasma
CATH 3.5 1d06A00 3.30.450.20 130 see topology Sensor protein FixL Sinorhizobium meliloti
CATH 3.5 1d0dA00 4.10.410.10 60 see topology Tick anticoagulant peptide Ornithodoros moubata
CATH 3.5 1d0nA03 3.40.20.10 121 see topology Gelsolin Equus caballus
CATH 3.5 1d0qA00 3.90.580.10 102 see topology DNA primase Geobacillus stearothermophilus
CATH 3.5 1d1nA00 2.40.30.10 99 see topology Translation initiation factor IF-2 Geobacillus stearothermophilus
CATH 3.5 1d1rA00 3.30.780.10 83 see topology Uncharacterized protein YciH Escherichia coli
CATH 3.5 1d2sA00 2.60.120.200 170 see topology Sex hormone-binding globulin Homo sapiens
CATH 3.5 1d2tA00 1.20.144.10 222 see topology Acid phosphatase Shimwellia blattae
CATH 3.5 1d2zA00 1.10.533.10 102 see topology Serine/threonine-protein kinase pelle Drosophila melanogaster
CATH 3.5 1d2zB00 1.10.533.10 150 see topology Protein Tube Drosophila melanogaster
CATH 3.5 1d3bB00 2.30.30.100 81 see topology Small nuclear ribonucleoprotein-associated proteins B and B' Homo sapiens
CATH 3.5 1d3bC00 2.30.30.100 71 see topology Small nuclear ribonucleoprotein Sm D3 Homo sapiens
CATH 3.5 1d3gA00 3.20.20.70 360 see topology Dihydroorotate dehydrogenase (quinone), mitochondrial Homo sapiens
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins