Protein Detail

Protein Information

Domain Id	d2bkfa1
DB_Source-Class	ASTRAL-1.75B, d.15.2.2
Molecule	u'Next to BRCA1 gene 1 protein'
Residues	85
Sequence
SSE Sequence^*(7)	`EEHEEHE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Ca.Ea.Ca.Ca-Cp.0.Ca.Cp.Ep-0.0.Hr.Ea-0.0.Cp-Ca.0-Ep`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d2bkfa1

Protein Id: d2bkfa1

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d2bkfa1

Protein Id: d2bkfa1

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
3	HEE	Ca.Ea-Ca	False		1fo1A01,
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
4	EEHE	Ea.Ca.Ca-Cp.Ep-Ea	True	3ZOQ:B, 3ZOQ:C, 4L5N:D, 4L5N:E, 4L5N:F,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2BKF	A	86	Next to BRCA1 gene 1 protein	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3A4R	A	79	NFATC2-interacting protein	View
3A4R	B	75	NFATC2-interacting protein	View
3GS2	A	109	E3 ubiquitin-protein ligase RING2	View
3GS2	C	108	E3 ubiquitin-protein ligase RING2	View
3I3T	D	75	Ubiquitin-60S ribosomal protein L40	View
3KH0	A	102	Ral guanine nucleotide dissociation stimulator	View
3KH0	B	105	Ral guanine nucleotide dissociation stimulator	View
3Q3J	A	102	Plexin-A2	View
3RD2	A	82	NFATC2-interacting protein	View
3TUO	D	91	DNA-binding protein SATB1	View
3ZDM	C	79	Ubiquitin-like protein MDY2	View
4D2K	A	81	LD32009p	View
4D2K	B	80	LD32009p	View
4D2K	D	80	LD32009p	View
4E71	A	90	Plexin-B2	View
4E74	A	101	Plexin-A4	View
4F8C	B	74	NEDD8	View
4HPL	B	83	Polycomb group RING finger protein 1	View
4HPM	B	81	Polycomb group RING finger protein 1	View
4HPM	D	82	Polycomb group RING finger protein 1	View
4IKG	A	78	Cell death activator CIDE-3	View
4MJS	A	88	Protein kinase C zeta type	View
4MJS	C	88	Protein kinase C zeta type	View
4MJS	D	83	Sequestosome-1	View
4MJS	E	88	Protein kinase C zeta type	View
4MJS	F	83	Sequestosome-1	View
4MJS	G	88	Protein kinase C zeta type	View
4MJS	H	84	Sequestosome-1	View
4MJS	I	88	Protein kinase C zeta type	View
4MJS	J	87	Sequestosome-1	View
4MJS	K	88	Protein kinase C zeta type	View
4MJS	L	86	Sequestosome-1	View
4MJS	M	88	Protein kinase C zeta type	View
4MJS	N	83	Sequestosome-1	View
4MJS	O	88	Protein kinase C zeta type	View
4MJS	P	81	Sequestosome-1	View
4MJS	Q	88	Protein kinase C zeta type	View
4MJS	R	84	Sequestosome-1	View
4MJS	S	88	Protein kinase C zeta type	View
4MJS	T	83	Sequestosome-1	View
4MJS	U	88	Protein kinase C zeta type	View
4MJS	V	80	Sequestosome-1	View
4MJS	W	88	Protein kinase C zeta type	View
4MJS	X	88	Sequestosome-1	View
4MO0	A	79	Protein translation factor SUI1 homolog	View
4OV6	A	92	Proprotein convertase subtilisin/kexin type 9	View
4OV6	D	93	Proprotein convertase subtilisin/kexin type 9	View
4PEO	A	92	Putative uncharacterized protein	View
4PEO	B	93	Putative uncharacterized protein	View
4RV0	D	73	Nuclear protein localization protein 4 homolog	View
4RV0	F	73	Nuclear protein localization protein 4 homolog	View
4WJQ	A	78	Small ubiquitin-related modifier 1	View
4WJQ	C	76	Small ubiquitin-related modifier 1	View
5EMZ	F	73	Polyubiquitin-B	View
5IAA	C	80	Ubiquitin-fold modifier 1	View
5IAA	D	80	Ubiquitin-fold modifier 1	View
5JH5	C	85	Polycomb group RING finger protein 1	View
1LXD	A	87	Ral guanine nucleotide dissociation stimulator	View
1OEY	J	102	Neutrophil cytosol factor 4	View
1S12	A	94	Uncharacterized protein	View
1WMH	A	83	Protein kinase C iota type	View
1WMH	B	82	Partitioning defective 6 homolog alpha	View
1YQB	A	88	Ubiquilin-3	View
2BKF	A	86	Next to BRCA1 gene 1 protein	View
2IDL	A	113	Uncharacterized protein	View
2NPT	A	102	Dual specificity mitogen-activated protein kinase kinase 5	View
2NPT	B	82	Mitogen-activated protein kinase kinase kinase 2	View
2W2N	P	93	Proprotein convertase subtilisin/kexin type 9	View
3IXS	A	111	E3 ubiquitin-protein ligase RING2	View
4NMX	A	92	Proprotein convertase subtilisin/kexin type 9	View

Topology view of query protein [ProLego results]

d2bkfa1

Topology Information