Protein Detail

Protein Information

Domain Id	d1gxua_
DB_Source-Class	ASTRAL-1.75B, d.58.10.1
Molecule	u'Carbamoyltransferase HypF'
Residues	88
Sequence
SSE Sequence^*(7)	`EHEEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ca.Ea.Ca.Ca.0-0.Cp.0.Ep.0-Ea.Hr.Ea.Ea-Cp.0.Ep-Ea.Ca-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : d1gxua_

Protein Id: d1gxua_

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : d1gxua_

Protein Id: d1gxua_

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3	EHE	Ca.Ca-Ep	True	2X4K:B, 3EJ9:B, 3EJ9:D, 3EJ9:F, 3MB2:B, 3MB2:D, 3MB2:F, 3MB2:H, 3MB2:J, 3MB2:L, 4X1C:B, 2PJR:B,	d3ej9b_,
4	EHEE	Ca.Ca.Ea-0.Cp-Ea	True	3KU7:A, 3KU7:B, 3ODV:B, 3ONR:A, 3ONR:B, 3ONR:C, 3ONR:D, 3ONR:E, 3ONR:F, 3ONR:G, 3ONR:H, 3ONR:I, 3ONR:J, 3ONR:K, 3ONR:L,	d1j5ja_, d1ozza_, d1pvza_, d1scoa_, d1sisa_, d1xrsb2, 1i2uA00, 1xrsB01,
4	HEEH	Ca.Ea.Ca-Cp.0-Hr	False		d2hg7a1, 2hg7A00,
5	EHEEH	Ca.Ca.Ea.Ca-0.Cp.0-Ea.Hr-Cp	False		d1zvpa2, d2cdqa3, d2hfva1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1GXU	A	88	Carbamoyltransferase HypF	View
1gxuA00	--	88	Carbamoyltransferase HypF	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3A2E	C	108	Antifungal protein ginkbilobin-2	View
3A2E	D	108	Antifungal protein ginkbilobin-2	View
3BR8	A	90	Acylphosphatase	View
3D2W	A	72	TAR DNA-binding protein 43	View
3FN1	A	90	NEDD8-activating enzyme E1 catalytic subunit	View
3GAX	A	107	Cystatin-C	View
3GAX	B	107	Cystatin-C	View
3OFF	A	82	LDLR chaperone boca	View
3OFH	A	86	LDLR chaperone MESD	View
3OFH	B	79	LDLR chaperone MESD	View
3OV5	A	84	Uncharacterized protein	View
3R27	A	84	Heterogeneous nuclear ribonucleoprotein L	View
3R27	B	84	Heterogeneous nuclear ribonucleoprotein L	View
3S7R	A	79	Heterogeneous nuclear ribonucleoprotein A/B	View
3S7R	B	78	Heterogeneous nuclear ribonucleoprotein A/B	View
4HI1	A	88	Acylphosphatase	View
4HI1	B	84	Acylphosphatase	View
4HI1	C	87	Acylphosphatase	View
4JTM	A	81	Type II secretion system protein D	View
4JTM	B	81	Type II secretion system protein D	View
4MAK	A	73	CRISPR-associated endoribonuclease Cas2	View
4MAK	B	76	CRISPR-associated endoribonuclease Cas2	View
4Y0F	A	78	TAR DNA-binding protein 43	View
4Y0F	B	77	TAR DNA-binding protein 43	View
5D78	A	80	RNA-binding protein MIP6	View
5IM0	A	76	Heterogeneous nuclear ribonucleoprotein D0	View
5IZN	A	91	50S ribosomal protein L25	View
5IZN	B	91	50S ribosomal protein L25	View
5IZN	E	90	50S ribosomal protein L25	View
5K6D	A	77	Putative secreted salivary protein	View
5K6D	B	78	Putative secreted salivary protein	View
1GXU	A	88	Carbamoyltransferase HypF	View
1U07	A	90	Protein TonB	View
1ULR	A	87	Acylphosphatase	View
1W2I	A	90	Acylphosphatase	View
2ACY	A	98	Acylphosphatase-1	View
2BJD	A	90	Acylphosphatase	View
2VH7	A	94	Acylphosphatase-1	View

Topology view of query protein [ProLego results]

d1gxua_

Topology Information