Protein Detail

Protein Information

Domain Id	1e8oA00
DB_Source-Class	CATH 3.5, 3.30.720.10
Molecule	Signal recognition particle 9 kDa protein
Residues	74
Sequence
SSE Sequence^*(6)	`EHEEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.0.Ea.Ea.Ca-0.Cp.0.Cp-0.Ca.Ca-Ep.Hp-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1e8oA00

Protein Id: 1e8oA00

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1e8oA00

Protein Id: 1e8oA00

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
4	EEEH	Ea.Ea.Ca-0.Cp-Ca	True	2YZT:A, 3BID:D, 3BID:H, 3FPU:B, 3TN2:A, 4MHE:C, 4MHE:D, 4OIJ:A, 4OIJ:B, 4WPY:A, 4XT1:B, 4ZLT:F, 5COY:A, 5COY:B, 5EKI:A, 5EKI:B, 5EKI:C, 5EKI:D, 5EKI:E, 5EKI:F, 1DOK:A, 1F2L:A, 2FGG:A, 2FHT:A, 2Q8R:E, 2RA4:A,	d1b3aa_, d1f2la_, d1g2sa_, d1j8ia_, d1o80a_, d1wiia_, d2fgga1, d2q8re_, d2ra4a_, 1b3aA00, 1b69A00, 1b3aA00, 1b69A00, 1eigA00, 1f2lA00, 1icwB00, 1j8iA00, 2fhtA00,
5	HEEEH	0.Ea.Ea.Ca-Cp.0.Cp-Ca.Ca-Hp	False	5AOX:D,	d1914a1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
5AOX	A	76	Signal recognition particle 9 kDa protein	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YWQ	A	87	Ribosomal subunit interface protein	View
2YWQ	B	87	Ribosomal subunit interface protein	View
2YWQ	C	88	Ribosomal subunit interface protein	View
2YWQ	D	87	Ribosomal subunit interface protein	View
3ABF	A	64	4-oxalocrotonate tautomerase	View
3ABF	C	63	4-oxalocrotonate tautomerase	View
3ABF	D	62	4-oxalocrotonate tautomerase	View
3IHS	A	81	Phosphocarrier protein HPr	View
3IHS	B	80	Phosphocarrier protein HPr	View
3M21	A	65	Probable tautomerase HP_0924	View
3M21	B	66	Probable tautomerase HP_0924	View
3M21	D	66	Probable tautomerase HP_0924	View
3M21	F	67	Probable tautomerase HP_0924	View
3PC7	A	80	DNA ligase 3	View
3PC7	B	76	DNA ligase 3	View
3RY0	A	65	Putative tautomerase	View
3RY0	B	63	Putative tautomerase	View
4FAZ	A	62	Tautomerase	View
4FAZ	B	62	Tautomerase	View
4FDX	A	61	Tautomerase	View
4FDX	B	64	Tautomerase	View
4HEI	A	92	Sigma-54 modulation protein, putative	View
4HEI	B	91	Sigma-54 modulation protein, putative	View
4RKU	C	80	Photosystem I iron-sulfur center	View
4WFT	A	94	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	View
4WFT	B	93	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	View
4WFT	C	94	tRNA-dihydrouridine(20) synthase [NAD(P)+]-like	View
4X1C	G	61	2-hydroxymuconate tautomerase	View
4X1C	H	62	2-hydroxymuconate tautomerase	View
5A6S	B	80	Endolysin	View
5ABR	A	104	Ferredoxin, 2Fe-2s	View
5ABR	B	104	Ferredoxin, 2Fe-2s	View
5IXM	B	141	LPS-assembly lipoprotein LptE	View
5IXM	F	145	LPS-assembly lipoprotein LptE	View

Topology view of query protein [ProLego results]

1e8oA00

Topology Information