Protein Detail

Protein Information

PDBId & Chain	2V3S : A
Molecule	Serine/threonine-protein kinase OSR1
Residues	96
Sequence
SSE Sequence^*(6)	`EEHHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.Ca.Hr.Ca.Ea-0.Cp.0.Cp-Ca.0.0-0.0-Ea`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 2V3S_A

Protein Id: 2V3S_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 2V3S_A

Protein Id: 2V3S_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
4	EEHH	Ea.Ca.Hr-0.Cp-Ca	False	5L7A:A, 5L7A:B, 5L7A:C, 5L7A:D, 5GJK:B,
4	HHEE	Hr.Ca.Ea-0.Cp-0	False		1y0uB00,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3HVZ	E	61	RelA/SpoT family protein	View
3V9O	A	121	Dihydroneopterin aldolase	View
4NTK	A	121	6-carboxy-5,6,7,8-tetrahydropterin synthase	View
4NTK	B	118	6-carboxy-5,6,7,8-tetrahydropterin synthase	View
4NTK	C	119	6-carboxy-5,6,7,8-tetrahydropterin synthase	View
4NTK	E	120	6-carboxy-5,6,7,8-tetrahydropterin synthase	View
5B78	A	119	Histone acetyltransferase KAT6A	View
5E6J	B	74	Polyubiquitin-C	View
5E6J	E	74	Polyubiquitin-C	View
5K0P	A	103	GTP cyclohydrolase I	View
5K0P	B	100	GTP cyclohydrolase I	View
5K0P	C	101	GTP cyclohydrolase I	View
5K0P	D	101	GTP cyclohydrolase I	View
5K0P	E	100	GTP cyclohydrolase I	View
5K0P	F	101	GTP cyclohydrolase I	View
5K0P	G	101	GTP cyclohydrolase I	View
5K0P	H	99	GTP cyclohydrolase I	View
5K0P	I	102	GTP cyclohydrolase I	View
5K0P	J	100	GTP cyclohydrolase I	View
5U2J	A	111	Histone acetyltransferase KAT6B	View
5U2J	B	110	Histone acetyltransferase KAT6B	View
5WXL	B	78	Regulator of ribosome biosynthesis	View
5WXL	D	78	Regulator of ribosome biosynthesis	View
1HZ6	A	67	Putative uncharacterized protein	View
1P9Y	A	117	Trigger factor	View

Topology view of query protein [ProLego results]

2V3S : A

Topology Information