Protein Detail

Protein Information

PDBId & Chain	1KWI : A
Molecule	Protegrin-3
Residues	85
Sequence
SSE Sequence^*(5)	`HEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.Ea.Ea.Ea-Cp.Ep.Ep-Ca.0-Cp`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1KWI_A

Protein Id: 1KWI_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1KWI_A

Protein Id: 1KWI_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
4	HEEE	Ca.Ea.Ea-Cp.Ep-Ca	False	3KA5:B,
4	EEEE	Ea.Ea.Ea-Ep.Ep-0	False	3KVP:A, 3KVP:B, 3KVP:E, 1R8O:B,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4EYC	A	103	Cathelicidin antimicrobial peptide	View
4EYC	B	99	Cathelicidin antimicrobial peptide	View
4N6T	A	79		View
d1kwia_	--	85	u'Protegrin-3'	View
1kwiA00	--	85	Protegrin-3	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3EGR	B	61	Phenylacetic acid degradation B	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2XV7	A	104	Vascular endothelial growth factor D	View
3C9A	C	48	Protein spitz	View
3C9A	D	48	Protein spitz	View
3CA7	A	50	Protein spitz	View
3EMO	B	126	Hia	View
3EMO	C	126	Hia	View
4AEQ	A	90	Colicin-M immunity protein	View
4D40	A	89	PilD processed protein	View
4D40	B	89	PilD processed protein	View
4DCZ	A	55	DnaJ-like protein MG200	View
4DCZ	B	55	DnaJ-like protein MG200	View
4EW5	A	101	Putative inner membrane protein	View
4H4F	B	63	Eglin C	View
4ZGM	A	100	Glucagon-like peptide 1 receptor	View
5G2F	A	86	Pilin, type IV, putative	View
5G2F	B	86	Pilin, type IV, putative	View
5G2F	C	74	Pilin, type IV, putative	View
1ZT3	A	80	Insulin-like growth factor-binding protein 1	View
2RET	A	79	Type II secretory pathway, pseudopilin EpsI	View

Topology view of query protein [ProLego results]

1KWI : A

Topology Information