Protein Detail

Protein Information

PDBId & Chain	5WSZ : C
Molecule	Chitin-binding protein
Residues	168
Sequence
SSE Sequence^*(10)	`EHEEEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ca.0.0.0.Ea.Ea.Ea.0.Ea-0.0.0.0.0.Ep.0.0-0.0.0.0.Ea.Ea.0-Ea.0.0.0.Ep.0-0.0.0.0.Ea-0.0.0.Ep-0.Cp.Ea-Ea.Ca-Ep`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5WSZ_C

Protein Id: 5WSZ_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5WSZ_C

Protein Id: 5WSZ_C

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
4	EEEE	0.0.Ea-0.0-0	True	3ZIA:I, 3ZIA:S, 5LSL:E, 5LSL:G, 5LSL:H, 2DSR:G,	d2dsrg1,
4	EEEE	0.Ea.Ea-0.0-0	True	2YH9:A, 2YH9:B, 2YH9:C, 3OW2:Z, 3UL5:C, 4YX1:A, 4YX1:B, 5U6Z:A, 1VQO:1, 2QRD:B,	d1vq811, d2f1la1, d2qlvb2, 1vq8100, 2f1lA02,
4	EEEE	Ea.Ea.Ea-0.Ep-Ea	True	3TBN:A, 4BV4:L, 4LXR:K, 5AOQ:L, 5AOQ:M,	d1jmab2, 1ccvA00, 1ccvA00,
4	EEEE	Ea.0.Ea-0.0-0	True	3BG4:D, 3UA0:A, 3UCI:A, 4R5R:A, 4R5R:B, 4ZRP:C, 4ZRP:D, 5B4Y:B, 5C13:A, 5C13:G, 5F0E:B, 5F86:B, 5JQP:B, 5KXH:B, 5KY0:B, 5KY4:B, 1J2L:A, 1KIG:L, 1LSL:A, 2QSK:A, 2W2N:E,	d1ataa_, d1b9wa2, d1i07a_, d1j2la_, d1jmab1, d1ppqa_, d1q4ga2, d2i9aa1, d2j01y1, d2qqra2, 1eqgA01, 1fycA00, 1i07A00, 1xkbA01, 2fd6A01,
5	HEEEE	0.0.0.Ea-0.0.0-0.0-0	False	3MHS:E,
5	EEEEE	0.0.Ea.Ea-0.0.0-0.0-0	False	1B0Y:A,
5	EEEEE	0.Ea.Ea.Ea-0.0.Ep-0.Ea-0	False	2XV7:A,
5	EEEEE	Ea.Ea.0.Ea-Ep.0.0-Ea.0-0	False	2PKA:A,
6	EEEEEE	Ea.Ea.Ea.0.Ea-0.Ep.0.0-Ea.Ea.0-Ep.0-Ea	False	3FCG:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
5FTZ	A	172	Chitin binding protein	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3CFA	A	164	GFP-like non-fluorescent chromoprotein FP595	View
3CFH	A	164	GFP-like non-fluorescent chromoprotein FP595	View
3CFH	G	164	GFP-like non-fluorescent chromoprotein FP595	View
3DL3	F	108	Tellurite resistance protein B	View
4A02	A	166	Chitin binding protein, putative	View
4Q97	A	108	Novel antigen receptor	View
4Q97	B	108	Novel antigen receptor	View
4RT5	B	99	Glyoxalase/bleomycin resistance protein/dioxygenase	View
5AA7	A	142	Chitinase	View
5AA7	B	142	Chitinase	View
5LZ6	A	126	Golgi resident protein GCP60	View
5WSZ	A	169	Chitin-binding protein	View
5WSZ	B	168	Chitin-binding protein	View
5WSZ	D	168	Chitin-binding protein	View
1LB6	A	155	TNF receptor-associated factor 6	View
2BEM	A	170	Chitin-binding protein	View
2P2E	A	114	Uncharacterized protein	View
2Q7A	A	152	Heme binding protein	View
2QUO	A	123	Heat-labile enterotoxin B chain	View
2UY6	B	150	Pap fimbrial major pilin protein	View
5VG0	A	142	Chitinase	View

Topology view of query protein [ProLego results]

5WSZ : C

Topology Information