ProLego Protein as lego blocks ...
 

Topology view of query protein [ProLego results]

Protein Information
PDBId & Chain5J11 : C
MoleculeCytokine receptor-like factor 2
Residues190
Sequence
SSE Sequence*(18) EEEEEEEEEEEEEEEHEE
* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]
Protein Topology 

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand]
Ea.Ea.Ea.0.Ea.Ea.Ea.0.0.Ea.0.Ea.Ea.Ea.Cp.0.Ea-0.0.Ea.0.0.0.0.0.0.0.0.Ep.Ep.0.Ea.0-0.Ep.Ep.0.0.0.0.0.0.0.Ea.Ea.0.0.0-0.Ea.Ea.0.0.0.0.0.0.0.Ep.Ca.0.0-0.Ep.0.0.0.0.0.0.0.Ea.0.0.0-Ea.0.0.0.0.0.0.0.0.0.0.0-Ep.0.0.0.0.0.0.0.0.Ep.0-Ep.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5J11_C
shapeImage
Protein Id: 5J11_C

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5J11_C
shapeImage
Protein Id: 5J11_C

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology
#SSE SSE string Contact String Preferrence  ProteinDB  DomainsDB
3 EEE Ea.Ea-0 True 3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B, d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3 EEE Ea.0-Ea False 4C2M:1, 4C2M:L, 4KSN:A, 4SGB:I, 6RXN:A, 2DSX:A, 2RDV:A, 2V3B:B, d1lkoa2, d1pfva3, d1yuza2, d1zina2, d2cona1, d4sgbi_, 2dsxA00, 4sgbI00,
3 EEE 0.Ea-0 True 2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A, d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3 EEE Ea.0-0 True 2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A, d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3 EEE Ea.Ea-Ep True 2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A, d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3 EEH Ea.Cp-0 False 5T59:C, 5T59:F, 5TDR:A, 2DS5:A, d2ds5a_,
3 EHE Cp.0-Ea False 5TDC:C,
4 EEEE Ea.Ea.Ea-0.0-0 True 4A94:D, 5JB9:E, 1XDT:R, d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,
4 EEEE Ea.0.Ea-Ea.0-Ep False 2Y5P:A, 2Y5P:B, 2Y5P:C, 4OZC:A,
4 EEEE 0.Ea.Ea-0.0-0 True 2YH9:A, 2YH9:B, 2YH9:C, 3OW2:Z, 3UL5:C, 4YX1:A, 4YX1:B, 5U6Z:A, 1VQO:1, 2QRD:B, d1vq811, d2f1la1, d2qlvb2, 1vq8100, 2f1lA02,
4 EEEE Ea.Ea.0-0.0-0 True 3IGM:A, 3IGM:B, 5DM6:F, 5FGO:A, 5FGO:C, 5FGO:E, 5FGO:F, 2WH7:A, d1pd0a5,
4 EEEE Ea.0.0-0.0-0 True 1L2W:I, 1RGV:A, 1WZ3:A, 2FGO:A, 4BL0:B, d1l2wi_, d1wz3a1, d2fgoa_,
4 EEEE 0.0.Ea-0.0-0 True 3ZIA:I, 3ZIA:S, 5LSL:E, 5LSL:G, 5LSL:H, 2DSR:G, d2dsrg1,
4 EEEE 0.Ea.0-0.0-0 True 2YNZ:A, 2YNZ:B, 2YNZ:C, 3C9I:A, 3C9I:B, 3C9I:C, 3C9I:D, 3C9I:E, 3C9I:F, 3ZMF:C, 5BU5:A, 5BU5:B, 5BU5:C, 5BU5:D, 5BU5:E, 5BU5:F, 5BU8:A, 5BU8:B,
4 EEEE Ea.0.Ea-0.0-0 True 3BG4:D, 3UA0:A, 3UCI:A, 4R5R:A, 4R5R:B, 4ZRP:C, 4ZRP:D, 5B4Y:B, 5C13:A, 5C13:G, 5F0E:B, 5F86:B, 5JQP:B, 5KXH:B, 5KY0:B, 5KY4:B, 1J2L:A, 1KIG:L, 1LSL:A, 2QSK:A, 2W2N:E, d1ataa_, d1b9wa2, d1i07a_, d1j2la_, d1jmab1, d1ppqa_, d1q4ga2, d2i9aa1, d2j01y1, d2qqra2, 1eqgA01, 1fycA00, 1i07A00, 1xkbA01, 2fd6A01,
4 EEEE Ea.Ea.Ea-Ep.Ep-Ea True 4AY9:B, 4AY9:E, 4AY9:H, 4YU8:A, 1EJA:B, 1HCN:B, d1hcnb_, d1ne3a_, d1xwdb1, 1hcnB00, 1xwdB00,
4 EEEH Ea.Ea.Cp-Ep.0-0 False d1adua2,
5 EEEEE Ea.Ea.Ea.0-0.0.0-0.0-0 False 4JZE:L, 5PAX:A, d2ct7a1, 1kliL00,
5 EEEEE Ea.Ea.0.0-0.0.0-0.0-0 False 4U1E:G, 5DMB:D,
5 EEEEE Ea.0.0.Ea-0.0.0-0.0-0 True 3O27:A, 1MVF:D, d1mvfd_, 1mvfD00,
6 EEEEEE Ea.0.0.Ea.0-0.0.0.0-0.0.0-0.0-0 False 1ub4C00,
6 EEEEEE 0.0.Ea.0.Ea-0.0.0.0-0.0.0-0.0-0 False 3EMF:A,
7 EEEEEEE Ea.Ea.0.Ea.Ea.Ea-0.Ea.0.0.0-Ep.Ep.0.0-Ea.Ea.0-Ep.0-0 False 1WWC:A, d1wwca_, 1wwcA00,
Protein In ProLegoDB with identical/similar Topology