Protein Detail

Protein Information

PDBId & Chain	1L2W : I
Molecule	Outer membrane virulence protein YopE
Residues	57
Sequence
SSE Sequence^*(4)	`EEHH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.0-0.0-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 1L2W_I

Protein Id: 1L2W_I

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 1L2W_I

Protein Id: 1L2W_I

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEH	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
1RGV	A	80	Ferredoxin	View
1WZ3	A	84	Ubiquitin-like protein ATG12B	View
2FGO	A	81	Ferredoxin (4Fe-4S)	View
4BL0	B	44	Checkpoint serine/threonine-protein kinase BUB1	View
d1l2wi_	--	57	u'Outer membrane virulence protein YopE'	View
d1wz3a1	--	84	u'Ubiquitin-like protein ATG12B'	View
d2fgoa_	--	81	u'Ferredoxin (4Fe-4S)'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3CBB	A	76	Hepatocyte nuclear factor 4-alpha	View
3CBB	B	78	Hepatocyte nuclear factor 4-alpha	View
3KXY	T	65	ExsE	View
3KXY	U	60	ExsE	View
3KXY	V	65	ExsE	View
3ZPV	5	61	Protein pygopus	View
3ZPV	7	61	Protein pygopus	View
4CMZ	C	86	Periaxin	View
4E6K	H	33	Uncharacterized protein	View
4L58	A	65	Histone-lysine N-methyltransferase 2E	View
4L7X	A	58	Death-inducer obliterator 1	View
4P1M	A	106	Cell division protein ZapA	View
4P1M	B	107	Cell division protein ZapA	View
4TNT	A	72	Mineralocorticoid receptor	View
4TNT	B	72	Mineralocorticoid receptor	View
4WXA	D	68	EKC/KEOPS complex subunit GON7	View
4WXA	E	69	EKC/KEOPS complex subunit GON7	View
5B3H	F	53	Zinc finger protein JACKDAW	View
5KRB	B	74	Nuclear receptor subfamily 6 group A member 1	View
5KRB	G	82	Nuclear receptor subfamily 6 group A member 1	View
5L7A	A	64	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View
5L7A	B	64	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View
5L7A	C	68	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View
5L7A	D	69	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View
1A6Y	A	77	Nuclear receptor subfamily 1 group D member 1	View
1CIT	A	89	Nuclear receptor subfamily 4 group A member 1	View
1DSZ	A	75	Retinoic acid receptor alpha	View
1HCQ	A	74	Estrogen receptor	View
1JNI	A	64	Periplasmic nitrate reductase, electron transfer subunit	View
1LAT	A	71	Glucocorticoid receptor	View
2C7A	A	78	Progesterone receptor	View
2HAN	A	78	Protein ultraspiracle	View
2HJ1	A	77	Protein RnfH	View
4LAD	B	69	E3 ubiquitin-protein ligase AMFR	View
4OLN	A	70		View
4OND	A	72		View
5GJK	B	68	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1	View

Topology view of query protein [ProLego results]

1L2W : I

Topology Information