Protein Detail

Protein Information

PDBId & Chain	5I8F : A
Molecule	Phenolic oxidative coupling protein
Residues	164
Sequence
SSE Sequence^*(10)	`EHHEEEEEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.0.Ca.Ea.Ea.Ea.Ea.Ea.Ca-0.0.Cp.Ep.0.0.0.0-0.0.0.0.0.0.0-0.Ca.0.0.0.0-0.Cp.0.0.0-0.Ca.0.0-0.Cp.Hr-Ea.Hr-Cp`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5I8F_A

Protein Id: 5I8F_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5I8F_A

Protein Id: 5I8F_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEE	Ea.Ea-Ep	True	2XTT:A, 3CFA:L, 3CFA:M, 3CFA:R, 3CFA:S, 3CFH:L, 3CFH:M, 3CFH:R, 3CFH:S, 3LE4:A, 3MLQ:E, 3MLQ:H, 3TVJ:I, 4F98:A, 4GWT:A, 4N7F:A, 4N7F:B, 4REX:A, 5DZD:B, 5E24:B, 5E24:D, 1NH2:C, 1NVP:C, 2A50:A, 2HIP:A,	d1gl0i_, d1goia1, d1kbea_, d1mkna_, d1nh2c_, d1nh2d2, d1o9aa1, d1rl2a2, d2dk1a1, d2hipa_, d2ho2a1, d2jmfa1, 1kbeA00, 1mknA00, 1nh2C00, 1nvpC00, 1o9aA01,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
4	HHEE	0.Ca.Ea-0.Cp-0	False	5TVM:A, 5TVM:C,
4	HEEE	Ca.Ea.Ea-Cp.Ep-0	False		d1yuaa2,
4	EEEE	Ea.Ea.Ea-0.0-0	True	4A94:D, 5JB9:E, 1XDT:R,	d1autl1, d1auua_, d1eaic_, d1g1ta2, d1hx2a_, d1ijqa2, d1m7ja2, d1nzia2, d1szba2, d1tfia_, d1xdtr_, d2bz6l_, d2y5fl_, d3bpse1, 1auuA00, 1auuA00, 1eaiC00, 1hx2A00, 1moxD00, 1nziB02, 1ridA03, 1tfiA00, 1wj2A00, 2bz6L00,
4	EEEH	Ea.Ea.Ca-0.0-0	True	3KZ5:A, 3KZ5:B, 3KZ5:E, 3VXV:A, 4LG7:A, 5BT2:A,	d1ncsa_, 1ncsA00,
5	EEEEE	Ea.Ea.Ea.Ea-0.0.0-0.0-0	False	5E8D:A,	d1k28a2, d1moxc_, d1r7aa1,
5	EEEEH	Ea.Ea.Ea.Ca-0.0.0-0.0-0	False	2HF1:A,	d2hf1a1,
6	EEEEEH	Ea.Ea.Ea.Ea.Ca-0.0.0.0-0.0.0-0.0-0	False	5FS4:A, 5FS4:B,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3F08	A	135	Uncharacterized protein	View
3GGN	A	129	Uncharacterized protein	View
3GGN	B	131	Uncharacterized protein	View
3P9V	A	156	Uncharacterized protein	View
3PUT	A	148	Hypothetical conserved protein	View
3PUT	B	153	Hypothetical conserved protein	View
3RD6	A	144	Mll3558 protein	View
3TFZ	A	168	Cyclase	View
3TFZ	B	165	Cyclase	View
3TFZ	C	164	Cyclase	View
3TFZ	D	164	Cyclase	View
3TFZ	E	165	Cyclase	View
3TFZ	F	161	Cyclase	View
3TVQ	A	152	Multifunctional cyclase-dehydratase-3-O-methyl transferase TcmN	View
4BK7	A	159	Major pollen allergen Bet v 1-A	View
4C94	A	161	Fra a 3 allergen	View
4C94	B	161	Fra a 3 allergen	View
4C94	C	161	Fra a 3 allergen	View
4C94	D	156	Fra a 3 allergen	View
4C94	E	161	Fra a 3 allergen	View
4C9C	A	158	Major strawberry allergen Fra a 1-E	View
4C9C	B	157	Major strawberry allergen Fra a 1-E	View
4I4J	E	136	Regulatory protein-like protein	View
4I4J	F	140	Regulatory protein-like protein	View
4I4J	H	139	Regulatory protein-like protein	View
4IGV	A	149	Kirola	View
4JHG	A	163	Nodulin-13	View
4M9B	A	156	Ara h 8 allergen	View
4M9B	B	156	Ara h 8 allergen	View
4Q0K	A	154	Phytohormone-binding protein	View
4REI	A	146	Major latex-like protein	View
5AMW	A	162	Fra a 2 allergen	View
5AMW	B	162	Fra a 2 allergen	View
1LO7	A	140	4-hydroxybenzoyl-CoA thioesterase	View
1Z54	A	132	Probable thioesterase	View
2BK0	A	153	Major allergen Api g 1, isoallergen 1	View
2FLH	A	144	Cytokinin-specific binding protein	View
2NS9	A	152	CoxG homolog	View
2OAF	A	141	Thioesterase superfamily	View
2OIW	A	129	Hypothetical conserved protein	View
2QIM	A	157	PR10.2B	View
2WQL	A	152	Major allergen Dau c 1	View

Topology view of query protein [ProLego results]

5I8F : A

Topology Information