Protein Detail

Protein Information

PDBId & Chain	5HS5 : A
Molecule	HTH-type transcriptional regulator SarX
Residues	113
Sequence
SSE Sequence^*(7)	`HHHHEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Hr.0.Hr.Ca.Ea.0-0.Hr.0.Cp.0-0.0.0.0-0.0.0-0.Hr-Ha`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 5HS5_A

Protein Id: 5HS5_A

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 5HS5_A

Protein Id: 5HS5_A

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HHH	Hr.0-0	True	2ZXX:D, 2ZXX:E, 3H87:D, 3KXE:C, 3KXE:D, 3PN7:D, 4FXE:A, 4FXE:B, 4J2N:B, 4J2N:D, 4QIC:B, 4QIC:D, 4Z8L:C, 5CEG:A, 5CEG:C, 1HWT:C, 1OV9:A, 1T0F:C, 1ZX3:A, 2BSQ:E, 2ER8:A, 5VJI:C, 5WWO:C, 5X3T:A,	d1ov9a_, d1y9ba1, d2bska1, d2bsqe1, 1bpeA01, 1bpeA01, 1uklC00,
3	HHH	0.Hr-Hr	True	3E7L:B, 4CGE:A, 4GHJ:A, 4OW1:B, 4OW1:E, 4OW1:W, 4OW1:X, 5LUP:A, 5LUP:B, 5LUP:C, 5LUP:D, 5LUP:E, 5LUP:F, 5LUP:G, 5LUP:H, 5LUP:I, 5LUP:J, 5LUP:K, 5LUP:L, 5LUS:A, 5LUS:B, 5LUS:C, 5LUS:D, 5LUS:E, 5LUS:F, 5LUS:G, 5LUS:H, 5LUS:I, 5LUS:J, 1A0A:A, 1HYP:A, 2OYY:A, 2VKL:A, 5HUB:A,	d1a0aa_, d1hypa_, d3cjrb1, 1a0aA00, 1hypA00,
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEH	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
4	HHHH	Hr.0.Hr-0.Hr-0	True	3G36:A, 3G36:B, 3G36:C, 3G36:D,
4	HHEE	Hr.Ca.Ea-0.Cp-0	False		1y0uB00,
4	HEEH	Ca.Ea.0-Cp.0-0	False	4X8W:D, 4X8W:E,
5	HHHEE	0.Hr.Ca.Ea-Hr.0.Cp-0.0-0	False		d1u5ta2,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YQY	B	125	Uncharacterized protein	View
2ZKZ	D	78	Transcriptional repressor PagR	View
2ZXX	C	179	DNA replication factor Cdt1	View
3CUO	C	95	Probable HTH-type transcriptional regulator YgaV	View
3GVA	A	107	Alkyltransferase-like protein 1	View
3HHH	A	100	Transcriptional regulator, PadR family	View
3HHH	B	101	Transcriptional regulator, PadR family	View
3M8E	A	101	Putative DNA-binding protein	View
3M8E	B	93	Putative DNA-binding protein	View
3PQK	A	98	Biofilm growth-associated repressor	View
3PQK	B	100	Biofilm growth-associated repressor	View
3PQK	C	100	Biofilm growth-associated repressor	View
3PQK	D	100	Biofilm growth-associated repressor	View
3PQK	E	100	Biofilm growth-associated repressor	View
3PQK	F	99	Biofilm growth-associated repressor	View
3U8I	A	123	Phospholipase A2, membrane associated	View
3U8I	B	123	Phospholipase A2, membrane associated	View
4A5N	A	104	Uncharacterized HTH-type transcriptional regulator YybR	View
4GGG	A	92	Repressor protein	View
4J20	A	88	Cytochrome c-555	View
4J20	B	88	Cytochrome c-555	View
4KMG	A	88	Cytochrome C6 (Soluble cytochrome F) (Cytochrome c553)	View
4PT7	A	131	Replication initiator A family protein	View
4PT7	D	132	Replication initiator A family protein	View
4XXL	A	92	Cytochrome c class I	View
4YK3	B	107	Uncharacterized protein	View
4YK3	C	107	Uncharacterized protein	View
5EPW	A	104	Nucleoprotein	View
5EPW	B	110	Nucleoprotein	View
5HS5	B	113	HTH-type transcriptional regulator SarX	View
5NT7	A	92	Maternal effect protein oskar	View
5NT7	C	92	Maternal effect protein oskar	View
1R1T	A	98	Transcriptional repressor SmtB	View
1SFX	A	106	Uncharacterized protein	View
2AIB	A	98	Beta-elicitin cinnamomin	View
2GIB	A	97	Nucleoprotein	View
2OQG	A	107	Possible transcriptional regulator, ArsR family protein	View
2PG4	A	90	Uncharacterized protein	View
2POS	A	94	Sylvaticin	View

Topology view of query protein [ProLego results]

5HS5 : A

Topology Information