Protein Detail

Protein Information

PDBId & Chain	3ALQ : W
Molecule	Tumor necrosis factor receptor superfamily member 1B
Residues	162
Sequence
SSE Sequence^*(14)	`EEEEEEEEEEEEEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.Ea.0.Ea.0.Ea.Ep.Ea.0.Ea.0.Ea-0.0.0.0.0.0.0.Ea.0.0.0.0-0.0.0.0.0.0.Ep.0.0.0.0-0.0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0.0-0.0.0.0.0.0.0.0-0.0.0.0.0.0.0-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3ALQ_W

Protein Id: 3ALQ_W

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3ALQ_W

Protein Id: 3ALQ_W

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
3	EEE	Ep.Ea-Ea	True	3Q8J:A, 3QTE:D, 4RBX:A, 5CUM:A, 5CUM:B, 5CUM:C,	d1bnba_, d1cbha_, d1cixa_, d1dkca_, d1ewsa_, d1kqha_, d1p8ba_, d1q3ja_, d2jdqd_, 1cixA00, 1cixA00,
4	EEEE	Ea.0.Ea-0.0-0	True	3BG4:D, 3UA0:A, 3UCI:A, 4R5R:A, 4R5R:B, 4ZRP:C, 4ZRP:D, 5B4Y:B, 5C13:A, 5C13:G, 5F0E:B, 5F86:B, 5JQP:B, 5KXH:B, 5KY0:B, 5KY4:B, 1J2L:A, 1KIG:L, 1LSL:A, 2QSK:A, 2W2N:E,	d1ataa_, d1b9wa2, d1i07a_, d1j2la_, d1jmab1, d1ppqa_, d1q4ga2, d2i9aa1, d2j01y1, d2qqra2, 1eqgA01, 1fycA00, 1i07A00, 1xkbA01, 2fd6A01,
4	EEEE	0.Ea.0-0.0-0	True	2YNZ:A, 2YNZ:B, 2YNZ:C, 3C9I:A, 3C9I:B, 3C9I:C, 3C9I:D, 3C9I:E, 3C9I:F, 3ZMF:C, 5BU5:A, 5BU5:B, 5BU5:C, 5BU5:D, 5BU5:E, 5BU5:F, 5BU8:A, 5BU8:B,
5	EEEEE	Ea.0.Ea.0-0.0.0-0.0-0	True	3TND:B, 3TND:H, 3ZVK:E, 3ZVK:F, 3ZVK:G, 3ZVK:H, 5K8J:A, 5K8J:D,	d2qqra1,
6	EEEEEE	Ea.0.Ea.0.Ea-0.0.0.0-0.0.0-0.0-0	True	3C05:A, 3C05:B, 3C05:C, 3C05:D, 3X3F:A, 4GNE:A, 4KU0:D, 5TLK:X, 1KI0:A, 1RMR:A, 1TEJ:A,
7	EEEEEEE	0.Ea.0.Ea.0.Ea-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0	False	1SKZ:A,
8	EEEEEEEE	Ea.0.Ea.0.Ea.0.Ea-0.0.0.0.0.0-0.0.0.0.0-0.0.0.0-0.0.0-0.0-0	False	1ZK9:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3ALQ	R	162	Tumor necrosis factor receptor superfamily member 1B	View
3ALQ	S	164	Tumor necrosis factor receptor superfamily member 1B	View
3ALQ	T	162	Tumor necrosis factor receptor superfamily member 1B	View
3ALQ	U	161	Tumor necrosis factor receptor superfamily member 1B	View
3ALQ	V	161	Tumor necrosis factor receptor superfamily member 1B	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YMZ	A	130	Galectin	View
2YMZ	B	130	Galectin	View
2YMZ	C	130	Galectin	View
2YMZ	E	130	Galectin	View
3BWR	E	264	Major capsid protein VP1	View
3C5P	D	187	Uncharacterized protein	View
3D4R	A	153	Uncharacterized protein	View
3D4R	C	153	Uncharacterized protein	View
3D4R	E	146	Uncharacterized protein	View
3E8L	C	176	Serine proteinase inhibitor A	View
3GBW	A	159	E3 ubiquitin-protein ligase MYCBP2	View
3IMM	A	193	Putative secreted glycosylhydrolase	View
3ME4	B	150	Tumor necrosis factor receptor superfamily member 11A	View
3MY2	A	124	Lipopolysaccharide export system protein LptC	View
3PPE	B	203	Cadherin-5	View
3QSQ	A	216	Capsid polyprotein VP90	View
3RWX	A	227	Putative lipoprotein	View
3S5Q	A	211	Putative glycosylhydrolase	View
3TGX	A	208	Interleukin-21 receptor	View
3TGX	C	209	Interleukin-21 receptor	View
3TGX	G	209	Interleukin-21 receptor	View
3TGX	I	209	Interleukin-21 receptor	View
3TGX	K	209	Interleukin-21 receptor	View
3TGX	M	208	Interleukin-21 receptor	View
3TGX	O	208	Interleukin-21 receptor	View
3U4K	A	159	Fimbria adhesin protein	View
3URF	Z	164	Tumor necrosis factor receptor superfamily member 11B	View
3VV1	A	141	Galectin	View
3VV1	B	140	Galectin	View
3WUC	A	135	Galectin	View
3WUC	B	137	Galectin	View
3ZD2	A	125	Complement factor H-related protein 1	View
3ZD2	B	119	Complement factor H-related protein 1	View
3ZLC	B	216	ER-derived vesicles protein ERV41	View
3ZQX	A	146	Glucanase	View
3ZUC	A	153	Endoglucanase	View
4AGK	A	152	Structural polyprotein	View
4B9C	A	150	Type 3a cellulose-binding domain protein	View
4CBP	A	203	Neural/ectodermal development factor IMP-L2	View
4CBP	B	202	Neural/ectodermal development factor IMP-L2	View
4CUA	B	176	Beta-galactosidase	View
4D5B	B	309	CymA protein	View
4EN3	A	186	Human nkt tcr beta chain	View
4FQE	A	170	Oligogalacturonate-specific porin KdgM	View
4I0K	A	200	CD276 antigen	View
4NBX	A	143	TcdA	View
4NZD	B	208	Interleukin-21 receptor	View
4PHX	G	126	Protein AggB	View
4QT6	A	154	Probable E3 ubiquitin-protein ligase HERC1	View
4ZB1	A	226	Blue chromoprotein, sgBP	View
5DMJ	D	167	Tumor necrosis factor receptor superfamily member 5	View
5IDB	A	142	Natterin-3	View
5IDB	B	142	Natterin-3	View
5JLV	C	97	Synaptic vesicle glycoprotein 2C	View
5JMC	F	92	Synaptic vesicle glycoprotein 2C	View
5KOU	A	216	Capsid polyprotein VP90	View
5KOU	C	219	Capsid polyprotein VP90	View
5KOU	D	217	Capsid polyprotein VP90	View
5LND	A	123	Fimbrial protein MyfA	View
7AHL	C	293	Alpha-hemolysin	View
1AXI	B	191	Growth hormone receptor	View
1BD7	A	171	Beta-crystallin B2	View
1G43	A	160	Scaffolding protein	View
1H4A	X	173	Gamma-crystallin D	View
1K4Z	A	157	Adenylyl cyclase-associated protein	View
1M8U	A	173	Gamma-crystallin F	View
1UUN	A	184	Porin MspA	View
1VMO	A	163	Vitelline membrane outer layer protein 1	View
1YTQ	A	181	Beta-crystallin B2	View
1Z1Y	A	159	Ookinete surface protein Pvs25	View
1ZSO	A	153	Uncharacterized protein	View
2C4X	A	246	Endoglucanase J	View
2ESV	D	196	T-cell receptor alpha chain C region	View
2FBE	A	185	Ret finger protein-like 4A	View
2HLE	A	188	Ephrin type-B receptor 4	View
2VMH	A	147	Fibronectin type III domain protein	View
2WRY	A	155	Interleukin-1beta	View

Topology view of query protein [ProLego results]

3ALQ : W

Topology Information