Protein Detail

Protein Information

PDBId & Chain	3ZVK : G
Molecule	Antitoxin VapB2
Residues	77
Sequence
SSE Sequence^*(5)	`EEEEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `Ea.0.Ea.0-0.0.0-0.0-0`

Prefence of topology : True

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3ZVK_G

Protein Id: 3ZVK_G

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3ZVK_G

Protein Id: 3ZVK_G

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	EEE	Ea.0-0	True	2YFV:C, 2ZJR:U, 3B08:B, 3B08:E, 3B08:H, 3B08:K, 3D2Q:D, 3EGG:D, 3GL6:A, 3HVQ:D, 3KXY:Y, 3MMY:B, 3MMY:D, 3MMY:F, 3MMY:H, 3O7A:A, 3TND:D, 3TND:F, 3ZG9:A, 4EAZ:C, 4EAZ:D, 4LM6:A, 4LM6:C, 4LMS:A, 4LMX:A, 4LMX:C, 4LMX:E, 4LMX:G, 4LMX:I, 4LMX:K, 4MMS:A, 4MMS:C, 4MMS:E, 4Q4W:4, 4QF2:A, 4QF2:B, 4QF2:C, 4QF2:D, 4QF3:A, 4QF3:B, 4WJW:A, 5E4X:A, 5IYZ:E, 5KX5:E, 1D4M:4, 1G3J:B, 1HXS:4, 1J8E:A, 1JY2:O, 1VPZ:A, 1XG0:A, 1XG0:B, 1XU1:R, 2BTI:A,	d1cxxa2, d1k0ra4, d1lv3a_, d1wvka_, d1xg0a_, d1xpaa2, d1xu1r_, d1xu2r_, d2btia_, d2bv3a4, d2glia4, d2gtlm2, d2zjru1, d3ryce_, 1e0aB00, 1g3jD00, 1jy2O00, 1lv3A00, 1wvkA00, 1xg0B00, 2fyuI00, 2gliA04,
3	EEE	0.Ea-0	True	2Y8T:B, 2Y8T:E, 2ZJR:Z, 3H31:A, 3O27:B, 3SF4:D, 3SF4:E, 3SF4:F, 4I6M:D, 4XO1:A, 4YIZ:B, 4YIZ:D, 4YIZ:F, 5DM6:Z, 5ITM:A, 5ITM:B, 5ITM:C, 5ITM:D, 5ITM:E, 5ITM:F, 1AVY:A, 1HLQ:A, 1ICF:I, 1ISU:A, 1PML:A, 2ATC:B, 2DLB:A, 2GGV:A,	d1hlqa_, d1icfi_, d1isua_, d1ppji_, d1rwsa_, d1skza1, d1tdha3, d1yfba1, d2dlba1, d2i9aa2, d2qam01, d2zdra1, d3h31a_, 1avyA00, 1avyB00, 1avyA00, 1avyB00, 1hlqA00, 1icfI00, 1ppjI00, 1rwsA00, 2fd6A02,
4	EEEE	Ea.0.Ea-0.0-0	True	3BG4:D, 3UA0:A, 3UCI:A, 4R5R:A, 4R5R:B, 4ZRP:C, 4ZRP:D, 5B4Y:B, 5C13:A, 5C13:G, 5F0E:B, 5F86:B, 5JQP:B, 5KXH:B, 5KY0:B, 5KY4:B, 1J2L:A, 1KIG:L, 1LSL:A, 2QSK:A, 2W2N:E,	d1ataa_, d1b9wa2, d1i07a_, d1j2la_, d1jmab1, d1ppqa_, d1q4ga2, d2i9aa1, d2j01y1, d2qqra2, 1eqgA01, 1fycA00, 1i07A00, 1xkbA01, 2fd6A01,
4	EEEH	0.Ea.0-0.0-0	True	2YNZ:A, 2YNZ:B, 2YNZ:C, 3C9I:A, 3C9I:B, 3C9I:C, 3C9I:D, 3C9I:E, 3C9I:F, 3ZMF:C, 5BU5:A, 5BU5:B, 5BU5:C, 5BU5:D, 5BU5:E, 5BU5:F, 5BU8:A, 5BU8:B,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3TND	B	68	Antitoxin VapB	View
3TND	H	67	Antitoxin VapB	View
3ZVK	E	57	Antitoxin VapB2	View
3ZVK	F	78	Antitoxin VapB2	View
3ZVK	H	57	Antitoxin VapB2	View
5K8J	A	79	VapB family protein	View
5K8J	D	67	VapB family protein	View
d2qqra1	--	59	u'Lysine-specific demethylase 4A'	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
3IC3	D	81	Uncharacterized protein	View
4G6T	B	71	Type III effector HopA1	View
1CMC	A	104		View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2YW8	A	61	RUN and FYVE domain-containing protein 1	View
3D3R	A	80	NiFe hydrogenase assembly chaperone HypC	View
3D3R	B	77	NiFe hydrogenase assembly chaperone HypC	View
3IXE	B	70	LIM and senescent cell antigen-like-containing domain protein 2	View
3KVP	C	44	Uncharacterized protein YmzC	View
3KVP	D	48	Uncharacterized protein YmzC	View
3LCZ	C	53	Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA	View
3N8B	B	71	Uncharacterized protein	View
3OBH	A	64	Uncharacterized protein	View
3OBH	B	65	Uncharacterized protein	View
3P1X	B	64	Interleukin enhancer-binding factor 3	View
3PM7	B	68	Uncharacterized protein	View
3T7L	A	74	Zinc finger FYVE domain-containing protein 16	View
4IN3	C	75	Chitin biosynthesis protein CHS5	View
4JZE	L	55	Coagulation factor VII	View
4ZAI	A	80	C-X-C motif chemokine 13	View
5A4O	A	74	Uncharacterized protein	View
5A4O	B	74	Uncharacterized protein	View
5F29	A	69	Uncharacterized protein	View
5F29	B	70	Uncharacterized protein	View
1PCF	A	66	Activated RNA polymerase II transcriptional coactivator p15	View
1VFY	A	67	Vacuolar protein sorting-associated protein 27	View
2CJS	C	54	Regulating synaptic membrane exocytosis protein 2	View
2H9E	C	52	Anti-coagulant protein C2	View
2HF1	A	59	UPF0434 protein CV_3345	View
2QIC	A	51	Inhibitor of growth protein 1	View
2VNF	A	50	Inhibitor of growth protein 4	View
3C6W	A	51	Inhibitor of growth protein 5	View
5PAX	A	58	Coagulation factor VII	View

Topology view of query protein [ProLego results]

3ZVK : G

Topology Information