Protein Detail

Protein Information

PDBId & Chain	4ZGL : B
Molecule	Uncharacterized HIT-like protein HP_0404
Residues	101
Sequence
SSE Sequence^*(7)	`HEEEHEE`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ea.Ea.Ca.0.Ea-Ca.0.Cp.0.Cp-Cp.Ca.0.Ea-0.0.0-0.0-0`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 4ZGL_B

Protein Id: 4ZGL_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 4ZGL_B

Protein Id: 4ZGL_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	0.Ea-Ca	False		d1hn6a_, 1hn6A00,
3	EEE	Ea.Ea-0	True	3FIF:F, 3MLQ:G, 4A94:C, 4EAG:B, 4EAI:B, 4OEL:B, 4PKF:C, 5BWD:C, 5DZD:A, 5K2M:E, 2BZY:A, 2QN5:B, 2V8Q:B,	d1co4a_, d1dl6a_, d1egfa_, d1gl1i_, d1k36a_, d1k81a_, d1ng2a1, d1nvpd2, d1pina1, d1tpga2, d1twfi1, d1twfi2, d2akla2, d2dara2, d2k4xa1, d2v8qb1, 1co4A00, 1dl6A00, 1co4A00, 1dl6A00, 1k36A00, 1nvpD02,
3	EEH	Ea.Ca-Cp	True	2ZVX:A, 2ZVX:B, 3BYB:A, 3BYB:B, 3BYB:C, 3FP7:J, 3IUF:A, 3M7Q:B, 3MJH:B, 3MJH:D, 3U1J:E, 3WUP:A, 4BQD:B, 4DTG:K, 4E1P:A, 4E1P:B, 4MPI:A, 4MPI:B, 4NTW:B, 4R2Y:A, 4R2Y:B, 4R2Y:C, 4R2Y:D, 4U30:W, 4U30:X, 4U30:Y, 4U30:Z, 4U32:X, 4UR6:A, 4UR6:B, 4WP4:A, 4WXA:F, 4XKL:D, 4Z0O:A, 5D0I:B, 5I72:A, 5I72:B, 5JB5:A, 5JB5:B, 5JB5:C, 5JG6:A, 5JG6:D, 1AAP:A, 1BUN:B, 1D0D:A, 1DTX:A, 1FAK:I, 1G6X:A, 1HG7:A, 1KTH:A, 1UCS:A, 1Y62:A, 2B9D:A, 2UUY:B, 2VUT:I, 3AUB:A, 5M4V:A,	d1b8ta2, d1bhia_, d1bika1, d1bunb_, d1d0da_, d1dtxa_, d1fu9a_, d1g6xa_, d1jjda_, d1ktha_, d1m36a_, d1neia_, d1njqa_, d1q9ba_, d1srka_, d1tf3a1, d1tf3a3, d1tocr1, d1tocr2, d1u5sb2, d1u85a1, d1ucsa_, d1v6ga2, d1wjpa3, d1x4ka1, d1x61a2, d1x6aa2, d1x6fa1, d1x6ha1, d1x6ha2, d1xbta2, d1yuja_, d2b9da1, d2csha2, d2cu8a2, d2cupa2, d2cuqa1, d2d8xa1, d2dasa1, d2dj7a1, d2djaa1, d2dlka2, d2dloa2, d2dsma1, d2epra1, d2epsa1, d2jz6a1, d2uuyb1, d2vuti1, d2vy4a1, d3m7qb_, 1aapA00, 1bunB00, 1d0dA00, 1aapA00, 1bunB00, 1d0dA00, 1dtxA00, 1g6xA00, 1gjzA00, 1jjdA00, 1kthA00, 1neiA00, 1ucsA00, 2vutI00,
4	HEEE	0.Ea.Ea-Ca.0-Cp	True	3G20:A, 3G20:B, 3GN9:A, 3GN9:B, 3GN9:C, 1T92:A,	d1t92a_,
4	EEEH	Ea.Ea.Ca-0.Cp-Ca	True	2YZT:A, 3BID:D, 3BID:H, 3FPU:B, 3TN2:A, 4MHE:C, 4MHE:D, 4OIJ:A, 4OIJ:B, 4WPY:A, 4XT1:B, 4ZLT:F, 5COY:A, 5COY:B, 5EKI:A, 5EKI:B, 5EKI:C, 5EKI:D, 5EKI:E, 5EKI:F, 1DOK:A, 1F2L:A, 2FGG:A, 2FHT:A, 2Q8R:E, 2RA4:A,	d1b3aa_, d1f2la_, d1g2sa_, d1j8ia_, d1o80a_, d1wiia_, d2fgga1, d2q8re_, d2ra4a_, 1b3aA00, 1b69A00, 1b3aA00, 1b69A00, 1eigA00, 1f2lA00, 1icwB00, 1j8iA00, 2fhtA00,
4	EEHE	Ea.Ca.0-Cp.0-0	True	4WXA:D, 4WXA:E, 5B3H:F, 4LAD:B,	d2ewla1,
4	EHEE	Ca.0.Ea-0.Cp-Ea	False	3ODV:A,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4ZGL	C	101	Uncharacterized HIT-like protein HP_0404	View
4ZGL	G	101	Uncharacterized HIT-like protein HP_0404	View
4ZGL	H	101	Uncharacterized HIT-like protein HP_0404	View

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
4ZGL	I	102	Uncharacterized HIT-like protein HP_0404	View

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZYZ	A	93	Uncharacterized protein	View
2ZYZ	C	96	Uncharacterized protein	View
3FOV	A	101	UPF0102 protein RPA0323	View
3OJ7	A	109	Histidine triad nucleotide-binding protein	View
3QY2	A	105	Cyclin-dependent kinases regulatory subunit	View
3QY2	B	105	Cyclin-dependent kinases regulatory subunit	View
4B0M	A	131	F1 capsule-anchoring protein	View
4C92	D	84	U6 snRNA-associated Sm-like protein LSm4	View
4FP5	D	98	Heat-labile enterotoxin IIB, B chain	View
4FP5	E	98	Heat-labile enterotoxin IIB, B chain	View
4FP5	F	98	Heat-labile enterotoxin IIB, B chain	View
4FP5	H	98	Heat-labile enterotoxin IIB, B chain	View
4INC	B	112	Histidine triad nucleotide-binding protein 2, mitochondrial	View
4ZGL	A	101	Uncharacterized HIT-like protein HP_0404	View
4ZGL	D	102	Uncharacterized HIT-like protein HP_0404	View
4ZGL	F	102	Uncharacterized HIT-like protein HP_0404	View
4ZGL	J	101	Uncharacterized HIT-like protein HP_0404	View
5UVM	A	114	Histidine triad (HIT) protein	View
5UVM	B	114	Histidine triad (HIT) protein	View
2GJV	A	136	Putative cytoplasmic protein	View

Topology view of query protein [ProLego results]

4ZGL : B

Topology Information