Protein Detail

Protein Information

PDBId & Chain	3V4M : B
Molecule	Splicing factor U2AF 65 kDa subunit
Residues	101
Sequence
SSE Sequence^*(7)	`EHEEHEH`

^* Secondary structure Elements (SSE) from N to C terminal of the PDB chain. [SSE: H ("Alpha Helix"); E ("Strands")]

Protein Topology

Topology Information

Protein topology is represented by contact and orientation of secondary structure elements (SSEs). The figure on the left represents the contact map with information on type of orientation two SSEs share (color coded). The matrix can be represented in following string representation.

Contact String
cs [Click here to expand] `0.Ca.Ea.Ca.Ca.Cp-0.Cp.0.0.0-Ea.0.0.Ca-Cp.0.Cp-Ea.0-Cp`

Prefence of topology : False

[ Hover over the plot rectangles to know more about SSE-contact ]

Linear Topology Graph : 3V4M_B

Protein Id: 3V4M_B

Figure Detail - Blocks: Helix (rectangles), Strands (triangles); Colormap: Red (N-terminal),--(Green)-- Blue (C-Terminal). Spatial Connectivity by arc Lines [Hover over the image to know the SSE detail]

Topology Graph : 3V4M_B

Protein Id: 3V4M_B

Expand

Figure Detail - Blocks: Helix (circle), Strands (arrow); Colormap: Red (N-terminal), Blue (C-Terminal). Spatial Connectivity by dotted Lines [Hover over the image to know the SSE detail]

Modules in queried Topology

#SSE	SSE string	Contact String	Preferrence	ProteinDB	DomainsDB
3	HEE	Ca.Ea-Cp	True	3E7R:L, 4GV5:A, 4GV5:B, 4GV5:C, 4OWT:C, 4X8W:G, 5TVO:B, 1MHM:B, 2I61:A,	d1ev0a_, d1fjna_, d1icaa_, d1jxca_, d1lira_, d1mm0a_, d1n8ma_, d1olza3, d1pnha_, d1shyb2, d2i61a_, d2pspa2, 1ev0A00, 1jxcA00, 1shyB02, 1wmtA00,
3	EEH	Ea.Ca-0	True	3OW2:T, 1VQO:U, 2PUY:A,	d1vq8u1, d1we9a_, d1wjva1, d2puya_, 1vq8U00,
4	EHEE	0.Ca.Ea-0.Cp-Ea	True	2YC1:C, 2YC1:F, 3PSM:A, 3PSM:B, 4AAZ:A, 4AAZ:B, 4HHF:A, 4UJ0:A, 4UJ0:B, 1NPI:A, 2A7T:A, 2SN3:A,	d1ayja_, d1brza_, d1myna_, d1pe4a_, d3psma_, d4aaza_, 1ayjA00, 1brzA00, 1ayjA00, 1brzA00, 1mr4A00, 1mynA00, 1npiA00, 1pe4A00, 2sn3A00,
6	EHEEHE	0.Ca.Ea.Ca.Ca-0.Cp.0.0-Ea.0.0-Cp.0-Ea	False	2RIL:A,	d1x4ea1, d1x4fa1, d1x5oa1,

Protein In ProLegoDB with identical/similar Topology

Proteins with Identical Topology

[Same secondary structure composition, contact-pair and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Protein with similar Topology [same scaffold]

[Same secondary structure composition and contact-pair but of different orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology

Proteins with topologies of same secondary structure (H/E) component

[Topologies with same secondary structure composition with different contact-pairs and orientation]

PDB Id	Chain	Residues	Molecule	Detail Topology
2ZFH	A	109	Protein CutA	View
2ZFH	B	107	Protein CutA	View
2ZFH	C	106	Protein CutA	View
2ZFH	D	107	Protein CutA	View
2ZFH	E	107	Protein CutA	View
2ZFH	F	107	Protein CutA	View
3BN4	A	92	Carbon dioxide-concentrating mechanism protein CcmK homolog 1	View
3BN4	B	91	Carbon dioxide-concentrating mechanism protein CcmK homolog 1	View
3BN4	C	92	Carbon dioxide-concentrating mechanism protein CcmK homolog 1	View
3BN4	D	91	Carbon dioxide-concentrating mechanism protein CcmK homolog 1	View
3BN4	E	92	Carbon dioxide-concentrating mechanism protein CcmK homolog 1	View
3BN4	F	92	Carbon dioxide-concentrating mechanism protein CcmK homolog 1	View
3C6V	B	144	Uncharacterized protein	View
3CCD	A	85	Phosphocarrier protein HPr	View
3CCD	B	85	Phosphocarrier protein HPr	View
3EXC	X	75	CRISPR-associated endoribonuclease Cas2 2	View
3GSD	A	105	Divalent-cation tolerance protein CutA	View
3GSD	B	105	Divalent-cation tolerance protein CutA	View
3GSD	C	105	Divalent-cation tolerance protein CutA	View
3GSD	D	104	Divalent-cation tolerance protein CutA	View
3GSD	E	104	Divalent-cation tolerance protein CutA	View
3GSD	F	105	Divalent-cation tolerance protein CutA	View
3GSD	G	105	Divalent-cation tolerance protein CutA	View
3GSD	H	105	Divalent-cation tolerance protein CutA	View
3GSD	I	105	Divalent-cation tolerance protein CutA	View
3GSD	J	105	Divalent-cation tolerance protein CutA	View
3GSD	K	105	Divalent-cation tolerance protein CutA	View
3GSD	L	105	Divalent-cation tolerance protein CutA	View
3LE1	A	87	Phosphotransferase system, HPr-related proteins	View
3LE1	B	85	Phosphotransferase system, HPr-related proteins	View
3LPE	A	84	Transcription elongation factor Spt5	View
3LPE	C	84	Transcription elongation factor Spt5	View
3LPE	E	84	Transcription elongation factor Spt5	View
3LPE	G	84	Transcription elongation factor Spt5	View
3MPY	A	96	Ethanolamine utilization protein EutM	View
3OPK	A	104	Divalent-cation tolerance protein CutA	View
3OPK	B	115	Divalent-cation tolerance protein CutA	View
3OPK	C	118	Divalent-cation tolerance protein CutA	View
3OQ4	C	99	DDK kinase regulatory subunit DBF4	View
3OQ4	D	99	DDK kinase regulatory subunit DBF4	View
3OQ4	E	96	DDK kinase regulatory subunit DBF4	View
3PA6	A	97	Microcephalin	View
3PA6	B	94	Microcephalin	View
3PA6	C	91	Microcephalin	View
3PC6	A	99	DNA repair protein XRCC1	View
3PC6	B	103	DNA repair protein XRCC1	View
3PD7	A	94	DNA topoisomerase 2-binding protein 1	View
3PD7	B	94	DNA topoisomerase 2-binding protein 1	View
3Q2S	C	93	Cleavage and polyadenylation specificity factor subunit 6	View
3Q2S	D	92	Cleavage and polyadenylation specificity factor subunit 6	View
3QFQ	B	120	Large T antigen	View
3S6E	A	110	RNA-binding protein 39	View
3S6E	B	108	RNA-binding protein 39	View
4AFF	A	110	Nitrogen regulatory protein P-II	View
4AXJ	B	89	Ethanolamine carboxysome strutural protein	View
4CU5	A	85	Endolysin	View
4CU5	B	85	Endolysin	View
4CU5	C	85	Endolysin	View
4CU5	D	85	Endolysin	View
4CU5	E	85	Endolysin	View
4CU5	F	85	Endolysin	View
4E98	A	110	Divalent-cation tolerance protein cutA homolog	View
4E98	B	106	Divalent-cation tolerance protein cutA homolog	View
4E98	C	105	Divalent-cation tolerance protein cutA homolog	View
4ID3	A	87	DNA repair protein REV1	View
4ID3	B	87	DNA repair protein REV1	View
4IYQ	A	107	Divalent ion tolerance protein CutA1	View
4IYQ	B	107	Divalent ion tolerance protein CutA1	View
4IYQ	C	107	Divalent ion tolerance protein CutA1	View
4LHP	A	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	B	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	C	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	D	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	E	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	F	130	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	G	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	H	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	I	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	J	131	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	K	130	FG41 Malonate Semialdehyde Decarboxylase	View
4LHP	L	131	FG41 Malonate Semialdehyde Decarboxylase	View
4OX6	A	103	Carbon dioxide concentrating mechanism protein CcmK	View
4OX6	B	93	Carbon dioxide concentrating mechanism protein CcmK	View
4P7T	A	85	Propanediol utilization protein PduA	View
4P7T	F	84	Propanediol utilization protein PduA	View
4QIV	A	86	Bacterial microcompartments family protein	View
4QIV	B	86	Bacterial microcompartments family protein	View
4QIV	C	86	Bacterial microcompartments family protein	View
4XWJ	B	83	Phosphocarrier protein HPr	View
4Y6I	A	103	Divalent-cation tolerance protein CutA	View
4Y6I	B	108	Divalent-cation tolerance protein CutA	View
4Y6I	C	103	Divalent-cation tolerance protein CutA	View
4Y6I	D	104	Divalent-cation tolerance protein CutA	View
4Y6I	E	104	Divalent-cation tolerance protein CutA	View
4Y6I	F	107	Divalent-cation tolerance protein CutA	View
5DJB	A	98	Microcompartments protein	View
5DJB	B	98	Microcompartments protein	View
5DJB	C	95	Microcompartments protein	View
5DJB	D	98	Microcompartments protein	View
5DJB	E	94	Microcompartments protein	View
5DJB	F	94	Microcompartments protein	View
5DJB	G	94	Microcompartments protein	View
5DJB	H	94	Microcompartments protein	View
1H98	A	77	Ferredoxin	View
1KR4	A	107	Divalent-cation tolerance protein CutA	View
1NZA	A	103	Divalent-cation tolerance protein CutA	View
1O5J	A	102	Divalent-cation tolerance protein CutA	View
1P1L	A	102	Divalent-cation tolerance protein CutA	View
1PCH	A	88	Phosphocarrier protein HPr	View
1PTF	A	87	Phosphocarrier protein HPr	View
1PYT	A	92	Carboxypeptidase A1	View
1SPH	A	87	Phosphocarrier protein HPr	View
1VK8	A	91	UPF0045 protein	View
1VMB	A	107	30S ribosomal protein S6	View
1Y51	A	87	Phosphocarrier protein HPr	View
2AAL	A	129	Malonate semialdehyde decarboxylase	View
2EPI	A	98	UPF0045 protein MJ1052	View
2EWH	A	93	Major carboxysome shell protein 1A	View
2IVY	A	88	CRISPR-associated endoribonuclease Cas2 1	View
2NUH	A	104	Periplasmic divalent cation tolerance protein	View
2NZU	L	86	Phosphocarrier protein HPr	View

Topology view of query protein [ProLego results]

3V4M : B

Topology Information