ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1d4bA00 3.10.20.10 122 see topology Cell death activator CIDE-B Homo sapiens
CATH 3.5 1d4oA00 3.40.50.1220 177 see topology NAD(P) transhydrogenase, mitochondrial Bos taurus
CATH 3.5 1d4tA00 3.30.505.10 104 see topology SH2 domain-containing protein 1A Homo sapiens
CATH 3.5 1d5rA01 3.90.190.10 174 see topology Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN Homo sapiens
CATH 3.5 1d5rA02 2.60.40.1110 133 see topology Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN Homo sapiens
CATH 3.5 1d7bA00 2.60.40.1210 185 see topology Cellobiose dehydrogenase Phanerochaete chrysosporium
CATH 3.5 1d7qA00 2.40.50.140 143 see topology Eukaryotic translation initiation factor 1A, X-chromosomal Homo sapiens
CATH 3.5 1d8bA00 1.10.150.80 81 see topology ATP-dependent helicase SGS1 Saccharomyces cerevisiae
CATH 3.5 1d8hA00 3.20.100.10 288 see topology mRNA-capping enzyme subunit beta Saccharomyces cerevisiae
CATH 3.5 1d8jA00 1.10.10.10 81 see topology Transcription initiation factor IIE subunit beta Homo sapiens
CATH 3.5 1d8wC00 3.20.20.150 393 see topology L-rhamnose isomerase Escherichia coli
CATH 3.5 1d8zA00 3.30.70.330 89 see topology ELAV-like protein 3 Mus musculus
CATH 3.5 1dabA00 2.160.20.20 539 see topology Pertactin autotransporter Bordetella pertussis
CATH 3.5 1dbwB00 3.40.50.2300 125 see topology Transcriptional regulatory protein FixJ Sinorhizobium meliloti
CATH 3.5 1dcfA00 3.40.50.2300 133 see topology Ethylene receptor 1 Arabidopsis thaliana
CATH 3.5 1dcsA00 2.60.120.330 279 see topology Deacetoxycephalosporin C synthase Streptomyces clavuligerus
CATH 3.5 1ddbA00 1.10.437.10 195 see topology BH3-interacting domain death agonist Mus musculus
CATH 3.5 1ddfA00 1.10.533.10 127 see topology Tumor necrosis factor receptor superfamily member 6 Homo sapiens
CATH 3.5 1ddlA00 2.60.120.20 188 see topology Virion protein Desmodium yellow mottle virus
CATH 3.5 1ddmA00 2.30.29.30 135 see topology Protein numb Drosophila melanogaster
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins