ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1ddwA00 2.30.29.30 109 see topology Homer protein homolog 1 Rattus norvegicus
CATH 3.5 1deeG00 1.20.5.420 51 see topology Immunoglobulin G-binding protein A Staphylococcus aureus
CATH 3.5 1deuB00 3.90.70.10 242 see topology Cathepsin Z Homo sapiens
CATH 3.5 1dfmB00 3.40.91.20 213 see topology Type-2 restriction enzyme BglII Bacillus subtilis
CATH 3.5 1dfuP00 2.40.240.10 94 see topology 50S ribosomal protein L25 Escherichia coli
CATH 3.5 1dg3A02 3.40.50.300 240 see topology Guanylate-binding protein 1 Homo sapiens
CATH 3.5 1dg6A00 2.60.120.40 149 see topology Tumor necrosis factor ligand superfamily member 10 Homo sapiens
CATH 3.5 1dgnA00 1.10.533.10 89 see topology Caspase recruitment domain-containing protein 18 Homo sapiens
CATH 3.5 1dgwA00 2.60.120.10 178 see topology Canavalin Canavalia ensiformis
CATH 3.5 1dhnA00 3.30.1130.10 121 see topology Dihydroneopterin aldolase Staphylococcus aureus
CATH 3.5 1di2A00 3.30.160.20 69 see topology Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog B Xenopus laevis
CATH 3.5 1di6A00 3.40.980.10 183 see topology Molybdopterin adenylyltransferase Escherichia coli
CATH 3.5 1dj7A00 3.90.460.10 109 see topology Ferredoxin-thioredoxin reductase, catalytic chain Synechocystis sp. PCC 6803
CATH 3.5 1dj7B00 2.30.30.50 73 see topology Ferredoxin-thioredoxin reductase, variable chain Synechocystis sp. PCC 6803
CATH 3.5 1dj8A00 1.10.890.10 79 see topology Acid stress chaperone HdeA Escherichia coli
CATH 3.5 1djxA03 2.60.40.150 131 see topology 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 Rattus norvegicus
CATH 3.5 1dl6A00 2.20.25.10 58 see topology Transcription initiation factor IIB Homo sapiens
CATH 3.5 1dljA02 3.40.50.720 108 see topology UDP-glucose 6-dehydrogenase Streptococcus pyogenes
CATH 3.5 1dlwA00 1.10.490.10 116 see topology Group 1 truncated hemoglobin trHbN Paramecium caudatum
CATH 3.5 1dm9A00 3.10.290.10 104 see topology Heat shock protein 15 Escherichia coli
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins