ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
Advance Search
Residue >=
Residue <=
Molecule: [Protein molecule containing the word as query]
Source: [Source organism of protein ]
 
 help

Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1c3yA00 1.10.238.20 108 see topology 12 kDa hemolymph protein Tenebrio molitor
CATH 3.5 1c41A00 3.40.50.960 165 see topology 6,7-dimethyl-8-ribityllumazine synthase Magnaporthe grisea
CATH 3.5 1c4kA01 3.40.50.220 105 see topology Ornithine decarboxylase, inducible Lactobacillus sp. 30A
CATH 3.5 1c4qA00 2.40.50.70 69 see topology Shiga-like toxin 1 subunit B Escherichia coli
CATH 3.5 1c4xA00 3.40.50.1820 281 see topology 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase Rhodococcus jostii
CATH 3.5 1c52A00 1.10.760.10 131 see topology Cytochrome c-552 Thermus thermophilus
CATH 3.5 1c5eA00 2.40.300.10 95 see topology Capsid decoration protein Escherichia virus Lambda
CATH 3.5 1c6vX00 2.30.30.10 55 see topology Pol polyprotein Simian immunodeficiency virus
CATH 3.5 1c75A00 1.10.760.10 71 see topology Cytochrome c-553 Sporosarcina pasteurii
CATH 3.5 1c7kA00 3.40.390.10 132 see topology Extracellular small neutral protease Streptomyces caespitosus
CATH 3.5 1c8bA00 3.40.50.1450 320 see topology Germination protease Bacillus megaterium
CATH 3.5 1c8cA00 2.40.50.40 64 see topology DNA-binding protein 7d Sulfolobus solfataricus
CATH 3.5 1c8eA00 2.170.30.10 534 see topology Capsid protein VP1 Feline parvovirus
CATH 3.5 1c8nC00 2.60.120.20 219 see topology Coat protein unidentified tobacco necrosis virus
CATH 3.5 1c8rA00 1.20.1070.10 222 see topology Bacteriorhodopsin Halobacterium salinarum
CATH 3.5 1c9kB00 3.40.50.300 180 see topology Bifunctional adenosylcobalamin biosynthesis protein CobU Salmonella enterica
CATH 3.5 1c9oA00 2.40.50.140 66 see topology Cold shock protein CspB [Bacillus] caldolyticus
CATH 3.5 1cc5A00 1.10.760.10 83 see topology Cytochrome c5 Azotobacter vinelandii
CATH 3.5 1cc8A00 3.30.70.100 72 see topology Metal homeostasis factor ATX1 Saccharomyces cerevisiae
CATH 3.5 1ccvA00 2.10.25.10 56 see topology Chymotrypsin inhibitor Apis mellifera
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins