ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1bj7A00 2.40.128.20 150 see topology Allergen Bos d 2 Bos taurus
CATH 3.5 1bjaA00 1.10.10.10 95 see topology Middle transcription regulatory protein motA Enterobacteria phage T4 sensu lato
CATH 3.5 1bjxA00 3.40.30.10 110 see topology Protein disulfide-isomerase Homo sapiens
CATH 3.5 1bkbA01 2.30.30.30 70 see topology Translation initiation factor 5A Pyrobaculum aerophilum
CATH 3.5 1bkbA02 2.40.50.140 62 see topology Translation initiation factor 5A Pyrobaculum aerophilum
CATH 3.5 1bkfA00 3.10.50.40 107 see topology Peptidyl-prolyl cis-trans isomerase FKBP1A Homo sapiens
CATH 3.5 1bkjA00 3.40.109.10 230 see topology NADPH-flavin oxidoreductase Vibrio harveyi
CATH 3.5 1bkpA00 3.30.572.10 278 see topology Thymidylate synthase 1 Bacillus subtilis
CATH 3.5 1bkrA00 1.10.418.10 108 see topology Spectrin beta chain, non-erythrocytic 1 Homo sapiens
CATH 3.5 1bkzA00 2.60.120.200 135 see topology Galectin-7 Homo sapiens
CATH 3.5 1bm8A00 3.10.260.10 99 see topology Transcription factor MBP1 Saccharomyces cerevisiae
CATH 3.5 1bm9A00 1.10.10.10 120 see topology Replication termination protein Bacillus subtilis
CATH 3.5 1bmfG00 1.10.287.80 122 see topology ATP synthase subunit gamma, mitochondrial Bos taurus
CATH 3.5 1bo4A00 3.40.630.30 137 see topology Aminoglycoside-(3)-N-acetyltransferase Serratia marcescens
CATH 3.5 1bolA00 3.90.730.10 222 see topology Ribonuclease Rh Rhizopus niveus
CATH 3.5 1booA00 3.40.50.150 282 see topology Modification methylase PvuII Proteus vulgaris
CATH 3.5 1bpeA01 1.10.150.110 43 see topology DNA polymerase beta Rattus norvegicus
CATH 3.5 1brtA00 3.40.50.1820 277 see topology Non-haem bromoperoxidase BPO-A2 Streptomyces aureofaciens
CATH 3.5 1brzA00 3.30.30.10 53 see topology Defensin-like protein Pentadiplandra brazzeana
CATH 3.5 1bteA00 2.10.60.10 92 see topology Activin receptor type-2A Mus musculus
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins