ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1b67A00 1.10.20.10 68 see topology DNA-binding protein HMf-1 Methanothermus fervidus
CATH 3.5 1b69A00 3.30.160.60 69 see topology Transposase from transposon Tn916 Enterococcus faecalis
CATH 3.5 1b6gA00 3.40.50.1820 308 see topology Haloalkane dehalogenase Xanthobacter autotrophicus
CATH 3.5 1b72A00 1.10.10.60 68 see topology Homeobox protein Hox-B1 Homo sapiens
CATH 3.5 1b79B00 1.10.860.10 103 see topology Replicative DNA helicase Escherichia coli
CATH 3.5 1b89A00 1.25.40.10 313 see topology Clathrin heavy chain 1 Bos taurus
CATH 3.5 1b8iA00 1.10.10.60 62 see topology Homeotic protein ultrabithorax Drosophila melanogaster
CATH 3.5 1b8iB00 1.10.10.60 58 see topology Homeobox protein extradenticle Drosophila melanogaster
CATH 3.5 1b93A00 3.40.50.1380 148 see topology Methylglyoxal synthase Escherichia coli
CATH 3.5 1b9lA00 3.30.1130.10 119 see topology Dihydroneopterin triphosphate 2'-epimerase Escherichia coli
CATH 3.5 1b9oA00 1.10.530.10 123 see topology Alpha-lactalbumin Homo sapiens
CATH 3.5 1b9rA00 3.10.20.30 105 see topology Terpredoxin Pseudomonas sp.
CATH 3.5 1bb9A00 2.30.30.40 83 see topology Myc box-dependent-interacting protein 1 Rattus norvegicus
CATH 3.5 1bbgA00 3.30.160.80 40 see topology Pollen allergen Amb t 5 Ambrosia trifida
CATH 3.5 1bbhA00 1.20.120.10 131 see topology Cytochrome c' Allochromatium vinosum
CATH 3.5 1bbyA00 1.10.10.10 69 see topology General transcription factor IIF subunit 2 Homo sapiens
CATH 3.5 1bcgA00 3.30.30.10 74 see topology Beta-insect excitatory toxin Bj-xtrIT Hottentotta judaicus
CATH 3.5 1bcpA00 3.90.210.10 224 see topology Pertussis toxin subunit 1 Bordetella pertussis
CATH 3.5 1bcpB02 2.40.50.110 110 see topology Pertussis toxin subunit 2 Bordetella pertussis
CATH 3.5 1bcpD00 2.40.50.110 110 see topology Pertussis toxin subunit 4 Bordetella pertussis
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins