ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
CATH 3.5 1a1xA00 2.40.15.10 106 see topology Protein p13 MTCP-1 Homo sapiens
CATH 3.5 1a2pA00 3.10.450.30 108 see topology Ribonuclease Bacillus amyloliquefaciens
CATH 3.5 1a32A00 1.10.287.10 85 see topology 30S ribosomal protein S15 Geobacillus stearothermophilus
CATH 3.5 1a34A00 2.60.120.220 147 see topology Coat protein Tobacco virtovirus 1
CATH 3.5 1a3aC00 3.40.930.10 146 see topology PTS system mannitol-specific EIICBA component Escherichia coli
CATH 3.5 1a4pA00 1.10.238.10 92 see topology Protein S100-A10 Homo sapiens
CATH 3.5 1a5rA00 3.10.20.90 103 see topology Small ubiquitin-related modifier 1 Homo sapiens
CATH 3.5 1a62A01 1.10.720.10 44 see topology Transcription termination factor Rho Escherichia coli
CATH 3.5 1a6cA02 2.60.120.20 165 see topology Capsid protein Tobacco ringspot virus
CATH 3.5 1a6fA00 3.30.230.10 113 see topology Ribonuclease P protein component Bacillus subtilis
CATH 3.5 1a6jA00 3.40.930.10 150 see topology Nitrogen regulatory protein Escherichia coli
CATH 3.5 1a6sA00 1.10.150.90 87 see topology Gag-Pro polyprotein Rous sarcoma virus
CATH 3.5 1a6yA00 3.30.50.10 77 see topology Nuclear receptor subfamily 1 group D member 1 Homo sapiens
CATH 3.5 1a73A00 3.90.75.10 162 see topology Intron-encoded endonuclease I-PpoI Physarum polycephalum
CATH 3.5 1a76A01 3.40.50.1010 207 see topology Flap endonuclease 1 Methanocaldococcus jannaschii
CATH 3.5 1a7jA00 3.40.50.300 279 see topology Phosphoribulokinase 1 Rhodobacter sphaeroides
CATH 3.5 1a8oA00 1.10.1200.30 66 see topology Gag-Pol polyprotein Human immunodeficiency virus 1
CATH 3.5 1a8yA01 3.40.30.10 124 see topology Calsequestrin-1 Oryctolagus cuniculus
CATH 3.5 1a8yA02 3.40.30.10 102 see topology Calsequestrin-1 Oryctolagus cuniculus
CATH 3.5 1a9nC00 3.80.10.10 174 see topology U2 small nuclear ribonucleoprotein A' Homo sapiens
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins