ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d5eaua2 a.128.1.3 323 see topology u'5-epi-aristolochene synthase' Nicotiana tabacum
ASTRAL-1.75B d5nula_ c.23.5.1 138 see topology u'Flavodoxin' Clostridium beijerinckii
ASTRAL-1.75B d5ruba1 c.1.14.1 311 see topology u'Ribulose bisphosphate carboxylase' Rhodospirillum rubrum
ASTRAL-1.75B d5ruba2 d.58.9.1 125 see topology u'Ribulose bisphosphate carboxylase' Rhodospirillum rubrum
ASTRAL-1.75B d7a3ha_ c.1.8.3 300 see topology u'Endoglucanase 5A' [Bacillus] agaradhaerens
ASTRAL-1.75B d7ahla_ f.6.1.1 293 see topology u'Alpha-hemolysin' Staphylococcus aureus
ASTRAL-1.75B d7fd1a_ d.58.1.2 106 see topology u'Ferredoxin-1' Azotobacter vinelandii
ASTRAL-1.75B d7odca1 b.49.2.3 158 see topology u'Ornithine decarboxylase' Mus musculus
ASTRAL-1.75B d7odca2 c.1.6.1 229 see topology u'Ornithine decarboxylase' Mus musculus
ASTRAL-1.75B d8abpa_ c.93.1.1 305 see topology u'L-arabinose-binding periplasmic protein' Escherichia coli
CATH 3.5 12asA00 3.30.930.10 327 see topology Aspartate--ammonia ligase Escherichia coli
CATH 3.5 16vpA00 1.10.1290.10 311 see topology Tegument protein VP16 Human alphaherpesvirus 1
CATH 3.5 1a0aA00 4.10.280.10 63 see topology Phosphate system positive regulatory protein PHO4 Saccharomyces cerevisiae
CATH 3.5 1a0cA00 3.20.20.150 437 see topology Xylose isomerase Thermoanaerobacterium thermosulfurigenes
CATH 3.5 1a0iA02 2.40.50.140 101 see topology DNA ligase Escherichia virus T7
CATH 3.5 1a0pA01 1.10.150.130 91 see topology Tyrosine recombinase XerD Escherichia coli
CATH 3.5 1a0pA02 1.10.443.10 180 see topology Tyrosine recombinase XerD Escherichia coli
CATH 3.5 1a0sP00 2.40.170.10 413 see topology Sucrose porin Salmonella enterica
CATH 3.5 1a17A00 1.25.40.10 159 see topology Serine/threonine-protein phosphatase 5 Homo sapiens
CATH 3.5 1a1wA00 1.10.533.10 83 see topology FAS-associated death domain protein Homo sapiens
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins