ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d3r20a_ c.37.1.0 217 see topology u'Cytidylate kinase' Mycobacterium smegmatis
ASTRAL-1.75B d3r26a_ c.94.1.1 231 see topology u'Molybdate-binding periplasmic protein' Escherichia coli
ASTRAL-1.75B d3r2na_ c.97.1.0 119 see topology u'Cytidine deaminase' Mycobacterium leprae
ASTRAL-1.75B d3r3qa_ d.20.1.2 153 see topology u'Suppressor protein STP22 of temperature-sensitive alpha-factor receptor and arginine permease' Saccharomyces cerevisiae
ASTRAL-1.75B d3r3ra_ b.81.1.0 184 see topology u'Putative ferripyochelin binding protein' Salmonella enterica
ASTRAL-1.75B d3r4ca_ c.108.1.0 268 see topology u'Hydrolase, haloacid dehalogenase-like hydrolase' Bacteroides thetaiotaomicron
ASTRAL-1.75B d3r5ga_ d.58.29.0 195 see topology u'CyaB' Pseudomonas aeruginosa
ASTRAL-1.75B d3r68a_ b.36.1.0 85 see topology u'Na(+)/H(+) exchange regulatory cofactor NHE-RF3' Mus musculus
ASTRAL-1.75B d3r6ua_ c.94.1.0 272 see topology u'Choline-binding protein' Bacillus subtilis
ASTRAL-1.75B d3r93a_ b.34.13.0 58 see topology u'M-phase phosphoprotein 8' Homo sapiens
ASTRAL-1.75B d3r9ta_ c.14.1.0 260 see topology u'EchA1_1' Mycobacterium avium
ASTRAL-1.75B d3r9va_ a.250.1.1 198 see topology u'Invasin IpaD' Shigella flexneri
ASTRAL-1.75B d3r9za_ d.18.1.0 154 see topology u'Single-stranded DNA-bindig protein WHY2, mitochondrial' Solanum tuberosum
ASTRAL-1.75B d3rdra_ d.118.1.0 153 see topology u'N-acetylmuramoyl-L-alanine amidase XlyA' Bacillus subtilis
ASTRAL-1.75B d3reaa_ d.102.1.1 127 see topology u'Protein Nef' Human immunodeficiency virus 1
ASTRAL-1.75B d3repa_ d.144.1.0 268 see topology u'Integrin-linked protein kinase' Homo sapiens
ASTRAL-1.75B d3reta_ a.130.1.1 97 see topology u'Isochorismate pyruvate lyase' Pseudomonas aeruginosa
ASTRAL-1.75B d3rg8a_ c.23.8.0 155 see topology u'Phosphoribosylaminoimidazole carboxylase' Treponema denticola
ASTRAL-1.75B d3rgha_ b.1.18.0 97 see topology u'Filamin-A' Homo sapiens
ASTRAL-1.75B d3riya_ c.31.1.5 272 see topology u'NAD-dependent protein deacylase sirtuin-5, mitochondrial' Homo sapiens
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins