ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d3psma_ g.3.7.5 47 see topology u'Defensin' Pachyrhizus erosus
ASTRAL-1.75B d3pt8a_ a.1.1.0 151 see topology u'Hemoglobin-2' Phacoides pectinatus
ASTRAL-1.75B d3pvia_ c.52.1.6 156 see topology u'Type-2 restriction enzyme PvuII' Proteus vulgaris
ASTRAL-1.75B d3pvja_ b.82.2.5 275 see topology u'Alpha-ketoglutarate-dependent taurine dioxygenase' Pseudomonas putida
ASTRAL-1.75B d3pvka_ b.50.1.2 330 see topology u'Candidapepsin-2' Candida albicans
ASTRAL-1.75B d3pwta_ e.10.1.1 562 see topology u'DNA topoisomerase 1' Escherichia coli
ASTRAL-1.75B d3px8x_ d.165.1.1 258 see topology u'Ricin' Ricinus communis
ASTRAL-1.75B d3pxxa_ c.2.1.0 282 see topology u'Carveol dehydrogenase' Mycobacterium avium
ASTRAL-1.75B d3pzsa_ c.72.1.5 277 see topology u'Pyridoxamine kinase' Yersinia pestis
ASTRAL-1.75B d3q15c_ c.23.1.1 116 see topology u'Sporulation initiation phosphotransferase F' Bacillus subtilis
ASTRAL-1.75B d3q20a_ a.280.1.0 114 see topology u'RbcX protein' Thermosynechococcus elongatus
ASTRAL-1.75B d3q46a_ b.40.5.1 178 see topology u'Inorganic pyrophosphatase' Thermococcus thioreducens
ASTRAL-1.75B d3q62a_ d.38.1.2 170 see topology u'3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase' Yersinia pestis
ASTRAL-1.75B d3q72a_ c.37.1.8 138 see topology u'GTP-binding protein RAD' Homo sapiens
ASTRAL-1.75B d3q80a_ c.68.1.0 218 see topology u'2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase' Mycobacterium tuberculosis
ASTRAL-1.75B d3q90a_ d.17.4.0 121 see topology u'Ras GTPase-activating protein-binding protein 1' Homo sapiens
ASTRAL-1.75B d3qapa_ f.13.1.1 219 see topology u'Sensory rhodopsin-2' Natronomonas pharaonis
ASTRAL-1.75B d3qbya_ b.34.9.2 93 see topology u'Hepatoma-derived growth factor-related protein 2' Homo sapiens
ASTRAL-1.75B d3qe1a_ b.36.1.0 102 see topology u'Sorting nexin-27' Rattus norvegicus
ASTRAL-1.75B d3qgma_ c.108.1.0 255 see topology u'p-nitrophenyl phosphatase (Pho2)' Archaeoglobus fulgidus
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins