ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d3osxa_ c.8.5.1 190 see topology u'60 kDa chaperonin' Xenorhabdus nematophila
ASTRAL-1.75B d3otma_ b.81.1.5 205 see topology u'Carbonic anhydrase' Methanosarcina thermophila
ASTRAL-1.75B d3ouga_ b.52.2.0 105 see topology u'Aspartate 1-decarboxylase' Francisella tularensis
ASTRAL-1.75B d3ov1a_ d.93.1.1 102 see topology u'Growth factor receptor-bound protein 2' Homo sapiens
ASTRAL-1.75B d3ovpa_ c.1.2.0 221 see topology u'Ribulose-phosphate 3-epimerase' Homo sapiens
ASTRAL-1.75B d3p1fa_ a.29.2.1 119 see topology u'CREB-binding protein' Homo sapiens
ASTRAL-1.75B d3p2ca_ a.102.1.8 431 see topology u'Uncharacterized protein' Bacteroides ovatus
ASTRAL-1.75B d3p3va_ c.38.1.0 159 see topology u'Putative PTS dependent N-acetyl-galactosamine-IIB component' Streptococcus pyogenes
ASTRAL-1.75B d3p48a_ b.85.4.0 127 see topology u"Deoxyuridine 5'-triphosphate nucleotidohydrolase" Saccharomyces cerevisiae
ASTRAL-1.75B d3p5ga_ d.169.1.0 128 see topology u'C-type lectin domain family 4 member K' Homo sapiens
ASTRAL-1.75B d3p6da_ b.60.1.2 139 see topology u'Fatty acid-binding protein, adipocyte' Homo sapiens
ASTRAL-1.75B d3pa3a_ d.144.1.7 261 see topology u'Serine/threonine-protein kinase Chk1' Homo sapiens
ASTRAL-1.75B d3pc6a_ c.15.1.1 99 see topology u'DNA repair protein XRCC1' Mus musculus
ASTRAL-1.75B d3pc7a_ c.15.1.2 80 see topology u'DNA ligase 3' Homo sapiens
ASTRAL-1.75B d3pdxa_ c.67.1.0 378 see topology u'Tyrosine aminotransferase' Mus musculus
ASTRAL-1.75B d3pfta_ b.45.1.0 156 see topology u'Oxidoreductase' Mycobacterium goodii
ASTRAL-1.75B d3pgga_ b.38.1.1 78 see topology u'U6 snRNA-associated Sm-like protein LSm5. SM domain' Cryptosporidium parvum
ASTRAL-1.75B d3pgua_ f.4.3.4 408 see topology u'Long-chain fatty acid transport protein' Escherichia coli
ASTRAL-1.75B d3pgxa_ c.2.1.0 270 see topology u'Uncharacterized NAD-dependent oxidoreductase MAP_4146' Mycobacterium avium
ASTRAL-1.75B d3ph9a_ c.47.1.0 133 see topology u'Anterior gradient protein 3' Homo sapiens
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins