ProLego Protein as lego blocks ...
 

Protein Domain Browser   [Search with followings]

Domain Id Database [Astral/CATH]
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Protein Domain List   [Click on contact String to explore]

Db Source domId Structure Class Residues Contact String Molecule Source
ASTRAL-1.75B d3mmca2 d.58.36.2 166 see topology u'Sulfite reductase, dissimilatory-type subunit alpha' Archaeoglobus fulgidus
ASTRAL-1.75B d3mmca3 d.134.1.1 185 see topology u'Sulfite reductase, dissimilatory-type subunit alpha' Archaeoglobus fulgidus
ASTRAL-1.75B d3mmcb1 d.58.1.5 65 see topology u'Sulfite reductase, dissimilatory-type subunit beta' Archaeoglobus fulgidus
ASTRAL-1.75B d3mmcb2 d.58.36.2 119 see topology u'Sulfite reductase, dissimilatory-type subunit beta' Archaeoglobus fulgidus
ASTRAL-1.75B d3mmcb3 d.134.1.1 179 see topology u'Sulfite reductase, dissimilatory-type subunit beta' Archaeoglobus fulgidus
ASTRAL-1.75B d3mmga_ b.47.1.0 217 see topology u'Genome polyprotein' Tobacco vein mottling virus
ASTRAL-1.75B d3mmha_ d.110.2.0 167 see topology u'Uncharacterized protein' Neisseria meningitidis
ASTRAL-1.75B d3mmsa_ c.56.2.0 225 see topology u"5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" Streptococcus pneumoniae
ASTRAL-1.75B d3mnga_ c.47.1.10 161 see topology u'Peroxiredoxin-5, mitochondrial' Homo sapiens
ASTRAL-1.75B d3moza_ c.45.1.4 314 see topology u'Myo-inositol hexaphosphate phosphohydrolase' Selenomonas ruminantium
ASTRAL-1.75B d3mpod_ c.108.1.0 225 see topology u'Predicted hydrolase of the HAD superfamily' Lactobacillus brevis
ASTRAL-1.75B d3mu7a_ c.1.8.0 273 see topology u'Xylanase and alpha-amylase inhibitor protein isoform II' Scadoxus multiflorus
ASTRAL-1.75B d3mv4a_ b.3.6.1 200 see topology u'Protocatechuate 3,4-dioxygenase alpha chain' Pseudomonas putida
ASTRAL-1.75B d3mv4m_ b.3.6.1 238 see topology u'Protocatechuate 3,4-dioxygenase beta chain' Pseudomonas putida
ASTRAL-1.75B d3mvka_ c.133.1.0 137 see topology u'RbsD or FucU transport' Bifidobacterium longum
ASTRAL-1.75B d3mvua_ a.132.1.0 219 see topology u'Transcriptional activator, TenA family' Ruegeria sp. TM1040
ASTRAL-1.75B d3mw6a_ a.136.1.1 120 see topology u'Uncharacterized protein' Neisseria meningitidis
ASTRAL-1.75B d3mw9a1 c.2.1.7 293 see topology u'Glutamate dehydrogenase 1, mitochondrial' Bos taurus
ASTRAL-1.75B d3mw9a2 c.58.1.1 208 see topology u'Glutamate dehydrogenase 1, mitochondrial' Bos taurus
ASTRAL-1.75B d3mxma_ c.55.3.5 226 see topology u'Three-prime repair exonuclease 1' Mus musculus
Table Description [Click here to expand]

Above table lists all the available domains in the ProLego database, from CATH and SCOP database. Each domain (row in the table), has the link to corresponding domain structure as well as the Topology link for detail analysis of proLeg-topologies. Table column heads can be read as following,

  • Db Source:  CATH (v. CATH_4.1) or SCOP (ASTRAL_30)
  • domId:  Domain Identity as provided by respective databases
  • Structure Class: Structure Classification string as provided by individual database.
  • Residues:  Number of amino acids (or residues) in the domain.
  • Contact String:  Link to explore the prolego topology present in that domain
  • Source:  Biological lsource of the proteins